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This orthogroup contains 241 genes from 144 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 241 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11246 | PRE-MRNA SPLICING FACTOR | 205 / 241 | 85.1% | 95.8% of 214 | ≥80% support |
| GO | GO:0005515 Molecular Function | protein binding | 213 / 241 | 88.4% | 98.6% of 216 | ≥80% support |
| GO | GO:0000349 Biological Process | generation of catalytic spliceosome for first transesterification step | 205 / 241 | 85.1% | 94.9% of 216 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 205 / 241 | 85.1% | 94.9% of 216 | ≥80% support |
| GO | GO:0000974 Cellular Component | Prp19 complex | 205 / 241 | 85.1% | 94.9% of 216 | ≥80% support |
| GO | GO:0071007 Cellular Component | U2-type catalytic step 2 spliceosome | 205 / 241 | 85.1% | 94.9% of 216 | ≥80% support |
| GO | GO:0071014 Cellular Component | post-mRNA release spliceosomal complex | 205 / 241 | 85.1% | 94.9% of 216 | ≥80% support |
| GO | GO:0006396 Biological Process | RNA processing | 201 / 241 | 83.4% | 93.1% of 216 | ≥80% support |
| Pfam | PF13181 | TPR_8 — Tetratricopeptide repeat | 155 / 241 | 64.3% | 91.2% of 170 | ≥50% support |
| KEGG | K12867 | SYF1, XAB2 — Spliceosome | 178 / 241 | 73.9% | 96.2% of 185 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Montipora cactus | BRAKERNUSP00000004351.1 | XP_044178847.1 | pre-mRNA-splicing factor SYF1-like [Acropora millepora] | Q9DCD2 Pre-mRNA-splicing factor SYF1 OS=Mus musculus OX=10090 GN=Xa | JBrowse |
| Montipora cactus | g17511.t1.1 | none | – | JBrowse |
