← Back to the gene family browser
Support counts the member genes carrying the term. % of genes is that count over all 6,131 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 5534 / 6,131 | 90.3% | 100.0% of 5,537 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 5541 / 6,131 | 90.4% | 99.9% of 5,546 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 5489 / 6,131 | 89.5% | 99.0% of 5,546 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 5411 / 6,131 | 88.3% | 97.6% of 5,546 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 4181 / 6,131 | 68.2% | 75.4% of 5,546 | ≥50% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 4143 / 6,131 | 67.6% | 74.7% of 5,546 | ≥50% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 3711 / 6,131 | 60.5% | 66.9% of 5,546 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paramuricea clavata | CAB3976610.1 | CAB3976610.1 | pancreas duodenum homeobox 1 [Paramuricea clavata] | P52947 Pancreas/duodenum homeobox protein 1 OS=Rattus norvegicus OX | JBrowse |
| Paramuricea clavata | CAB3976806.1 | CAB3976806.1 | homeobox MSX-1, partial [Paramuricea clavata] | Q04281 Homeobox protein XHOX-7.1 (Fragment) OS=Xenopus laevis OX=83 | JBrowse |
| Paramuricea clavata | CAB3978883.1 | CAB3978883.1 | nk homeobox 7 [Paramuricea clavata] | P56407 Homeobox protein ceh-9 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Paramuricea clavata | CAB3978884.1 | CAB3978884.1 | homeobox slou-like [Paramuricea clavata] | Q75W95 NK1 transcription factor-related protein 1 OS=Danio rerio OX | JBrowse |
| Paramuricea clavata | CAB3978885.1 | CAB3978885.1 | homeobox HMX3-A [Paramuricea clavata] | Q90XP0 Homeobox protein HMX3-A OS=Oryzias latipes OX=8090 GN=hmx3a | JBrowse |
| Paramuricea clavata | CAB3980155.1 | CAB3980155.1 | homeobox notochord-like [Paramuricea clavata] | Q9UIW0 Ventral anterior homeobox 2 OS=Homo sapiens OX=9606 GN=VAX2 | JBrowse |
| Paramuricea clavata | CAB3980157.1 | CAB3980157.1 | ventral anterior homeobox 2 [Paramuricea clavata] | Q9IAX9 Ventral anterior homeobox 2b OS=Xenopus laevis OX=8355 GN=va | JBrowse |
| Paramuricea clavata | CAB3982641.1 | CAB3982641.1 | homeobox Hox-D3, partial [Paramuricea clavata] | P31247 Homeobox protein Hox-B3 (Fragment) OS=Xenopus laevis OX=8355 | JBrowse |
| Paramuricea clavata | CAB3990074.1 | CAB3990074.1 | homeobox unplugged-like [Paramuricea clavata] | P53547 Homeobox protein ceh-1 (Fragment) OS=Caenorhabditis elegans | JBrowse |
| Paramuricea clavata | CAB3990076.1 | CAB3990076.1 | barH-like 1 homeobox [Paramuricea clavata] | Q9UMQ3 Homeobox protein BarH-like 2 OS=Homo sapiens OX=9606 GN=BARX | JBrowse |
| Paramuricea clavata | CAB3991644.1 | CAB3991644.1 | Homeobox not2 [Paramuricea clavata] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Paramuricea clavata | CAB3991849.1 | CAB3991849.1 | partial [Paramuricea clavata] | P09532 Homeobox protein engrailed (Fragment) OS=Tripneustes gratill | JBrowse |
| Paramuricea clavata | CAB3993069.1 | CAB3993069.1 | Homeobox MOX-1, partial [Paramuricea clavata] | F1Q4R9 Homeobox protein MOX-1 OS=Danio rerio OX=7955 GN=meox1 PE=2 | JBrowse |
| Paramuricea clavata | CAB3996177.1 | CAB3996177.1 | barH-like 1 homeobox, partial [Paramuricea clavata] | P15858 Homeobox protein H40 (Fragment) OS=Apis mellifera OX=7460 PE | JBrowse |
| Paramuricea clavata | CAB3998126.1 | CAB3998126.1 | homeobox Nkx- -like [Paramuricea clavata] | A5YC49 Homeobox protein Nkx-6.3 OS=Xenopus laevis OX=8355 GN=nkx6-3 | JBrowse |
| Paramuricea clavata | CAB3998238.1 | CAB3998238.1 | homeobox ceh-19-like, partial [Paramuricea clavata] | O88181 BarH-like 2 homeobox protein OS=Rattus norvegicus OX=10116 G | JBrowse |
| Paramuricea clavata | CAB3999220.1 | CAB3999220.1 | barH-like 1 homeobox [Paramuricea clavata] | Q24255 Homeobox protein B-H1 OS=Drosophila melanogaster OX=7227 GN= | JBrowse |
| Paramuricea clavata | CAB4003139.1 | CAB4003139.1 | homeobox Hox-A5-like [Paramuricea clavata] | P15860 Homeobox protein H90 (Fragment) OS=Apis mellifera OX=7460 PE | JBrowse |
| Paramuricea clavata | CAB4003274.1 | CAB4003274.1 | homeobox EMX1-like [Paramuricea clavata] | Q04743 Homeobox protein EMX2 OS=Homo sapiens OX=9606 GN=EMX2 PE=1 S | JBrowse |
| Paramuricea clavata | CAB4006922.1 | CAB4006922.1 | not homeobox transcription factor [Paramuricea clavata] | P31315 GS homeobox 1 OS=Mus musculus OX=10090 GN=Gsx1 PE=2 SV=2 | JBrowse |
