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Support counts the member genes carrying the term. % of genes is that count over all 2,856 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00104 | Hormone_recep — Ligand-binding domain of nuclear hormone receptor | 2479 / 2,856 | 86.8% | 96.0% of 2,583 | ≥80% support |
| Pfam | PF00105 | zf-C4 — Zinc finger, C4 type (two domains) | 2307 / 2,856 | 80.8% | 89.3% of 2,583 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 2355 / 2,856 | 82.5% | 91.5% of 2,574 | ≥80% support |
| GO | GO:0008270 Molecular Function | zinc ion binding | 2330 / 2,856 | 81.6% | 90.5% of 2,574 | ≥80% support |
| GO | GO:0004879 Molecular Function | nuclear receptor activity | 2321 / 2,856 | 81.3% | 90.2% of 2,574 | ≥80% support |
| GO | GO:0003700 Molecular Function | DNA-binding transcription factor activity | 2307 / 2,856 | 80.8% | 89.6% of 2,574 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 2307 / 2,856 | 80.8% | 89.6% of 2,574 | ≥80% support |
| GO | GO:0043565 Molecular Function | sequence-specific DNA binding | 2307 / 2,856 | 80.8% | 89.6% of 2,574 | ≥80% support |
| PANTHER | PTHR24083 | NUCLEAR HORMONE RECEPTOR | 1684 / 2,856 | 59.0% | 65.4% of 2,575 | ≥50% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 1971 / 2,856 | 69.0% | 76.6% of 2,574 | ≥50% support |
| GO | GO:0030154 Biological Process | cell differentiation | 1694 / 2,856 | 59.3% | 65.8% of 2,574 | ≥50% support |
| GO | GO:0048856 Biological Process | anatomical structure development | 1684 / 2,856 | 59.0% | 65.4% of 2,574 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paramuricea clavata | CAB3984470.1 | CAB3984470.1 | COUP transcription factor 1 isoform X5 [Paramuricea clavata] | Q60632 COUP transcription factor 1 OS=Mus musculus OX=10090 GN=Nr2f | JBrowse |
| Paramuricea clavata | CAB3989087.1 | CAB3989087.1 | nuclear receptor subfamily 2 group E member 1-like [Paramuricea clavata] | Q9TTF0 Photoreceptor-specific nuclear receptor OS=Bos taurus OX=991 | JBrowse |
| Paramuricea clavata | CAB3992290.1 | CAB3992290.1 | photoreceptor-specific nuclear receptor-like [Paramuricea clavata] | Q9TTF0 Photoreceptor-specific nuclear receptor OS=Bos taurus OX=991 | JBrowse |
| Paramuricea clavata | CAB3994046.1 | CAB3994046.1 | COUP transcription factor 2-like isoform X1, partial [Paramuricea clavata] | Q9TTR7 COUP transcription factor 2 OS=Bos taurus OX=9913 GN=NR2F2 P | JBrowse |
| Paramuricea clavata | CAB3995472.1 | CAB3995472.1 | COUP transcription factor 1 [Paramuricea clavata] | Q9Y5X4 Photoreceptor-specific nuclear receptor OS=Homo sapiens OX=9 | JBrowse |
| Paramuricea clavata | CAB3997018.1 | CAB3997018.1 | nuclear receptor subfamily 4 group A member 1 [Paramuricea clavata] | Q04913 Nuclear receptor subfamily 4 group A member 1 OS=Xenopus lae | JBrowse |
| Paramuricea clavata | CAB3998299.1 | CAB3998299.1 | retinoic acid receptor RXR-alpha [Paramuricea clavata] | P19793 Retinoic acid receptor RXR-alpha OS=Homo sapiens OX=9606 GN= | JBrowse |
| Paramuricea clavata | CAB3998301.1 | CAB3998301.1 | Retinoic acid receptor RXR-alpha [Paramuricea clavata] | P19793 Retinoic acid receptor RXR-alpha OS=Homo sapiens OX=9606 GN= | JBrowse |
| Paramuricea clavata | CAB4001127.1 | CAB4001127.1 | nuclear receptor subfamily 2 group C member 2 isoform X2 [Paramuricea clavata] | P49117 Nuclear receptor subfamily 2 group C member 2 OS=Mus musculu | JBrowse |
| Paramuricea clavata | CAB4003794.1 | CAB4003794.1 | hepatocyte nuclear factor 4-gamma-like isoform X1 [Paramuricea clavata] | Q14541 Hepatocyte nuclear factor 4-gamma OS=Homo sapiens OX=9606 GN | JBrowse |
| Paramuricea clavata | CAB4008769.1 | CAB4008769.1 | retinoic acid receptor RXR-alpha-B-like [Paramuricea clavata] | Q90415 Retinoic acid receptor RXR-alpha-B OS=Danio rerio OX=7955 GN | JBrowse |
| Paramuricea clavata | CAB4009853.1 | CAB4009853.1 | photoreceptor-specific nuclear receptor-like [Paramuricea clavata] | Q9VML1 Protein dissatisfaction OS=Drosophila melanogaster OX=7227 G | JBrowse |
| Paramuricea clavata | CAB4015398.1 | CAB4015398.1 | nuclear receptor subfamily 2 group F member 6-like, partial [Paramuricea clavata] | Q9Y5X4 Photoreceptor-specific nuclear receptor OS=Homo sapiens OX=9 | JBrowse |
| Paramuricea clavata | CAB4017395.1 | CAB4017395.1 | steroid hormone receptor ERR2 isoform X2 [Paramuricea clavata] | Q5BJR8 Retinoic acid receptor RXR-gamma OS=Rattus norvegicus OX=101 | JBrowse |
| Paramuricea clavata | CAB4031623.1 | CAB4031623.1 | hepatocyte nuclear factor 4-alpha isoform X1 [Paramuricea clavata] | Q91766 Hepatocyte nuclear factor 4-alpha OS=Xenopus laevis OX=8355 | JBrowse |
| Paramuricea clavata | CAB4032516.1 | CAB4017395.1 | steroid hormone receptor ERR2 isoform X2 [Paramuricea clavata] | Q5BJR8 Retinoic acid receptor RXR-gamma OS=Rattus norvegicus OX=101 | JBrowse |
| Paramuricea clavata | CAB4036151.1 | CAB4036151.1 | orphan steroid hormone receptor 2-like, partial [Paramuricea clavata] | Q90416 Retinoic acid receptor RXR-gamma-A OS=Danio rerio OX=7955 GN | JBrowse |
| Paramuricea clavata | CAB4036152.1 | CAB4036152.1 | retinoic acid receptor RXR-alpha-B isoform X2, partial [Paramuricea clavata] | Q90416 Retinoic acid receptor RXR-gamma-A OS=Danio rerio OX=7955 GN | JBrowse |
