← Back to the gene family browser
Support counts the member genes carrying the term. % of genes is that count over all 2,252 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 1928 / 2,252 | 85.6% | 97.9% of 1,970 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 1977 / 2,252 | 87.8% | 99.8% of 1,982 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 1923 / 2,252 | 85.4% | 97.0% of 1,982 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 1851 / 2,252 | 82.2% | 93.4% of 1,982 | ≥80% support |
| PANTHER | PTHR24329 | HOMEOBOX PROTEIN ARISTALESS | 1394 / 2,252 | 61.9% | 71.5% of 1,951 | ≥50% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 1765 / 2,252 | 78.4% | 89.1% of 1,982 | ≥50% support |
| GO | GO:0000977 Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 1404 / 2,252 | 62.3% | 70.8% of 1,982 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paramuricea clavata | CAB3977455.1 | CAB3977455.1 | homeobox goosecoid-like [Paramuricea clavata] | P54366 Homeobox protein goosecoid OS=Drosophila melanogaster OX=722 | JBrowse |
| Paramuricea clavata | CAB3982040.1 | CAB3982040.1 | homeobox unc-4 homolog [Paramuricea clavata] | P97830 Homeobox protein unc-4 homolog OS=Rattus norvegicus OX=10116 | JBrowse |
| Paramuricea clavata | CAB3986911.1 | CAB3986911.1 | homeobox aristaless-like 4 [Paramuricea clavata] | O35137 Homeobox protein aristaless-like 4 OS=Mus musculus OX=10090 | JBrowse |
| Paramuricea clavata | CAB3986912.1 | CAB3986912.1 | aristaless-like homeobox [Paramuricea clavata] | O35137 Homeobox protein aristaless-like 4 OS=Mus musculus OX=10090 | JBrowse |
| Paramuricea clavata | CAB3986913.1 | CAB3986913.1 | aristaless-like homeobox [Paramuricea clavata] | O35137 Homeobox protein aristaless-like 4 OS=Mus musculus OX=10090 | JBrowse |
| Paramuricea clavata | CAB3988248.1 | CAB3988248.1 | ---NA--- [Paramuricea clavata] | – | JBrowse |
| Paramuricea clavata | CAB3989749.1 | CAB3989749.1 | visual system homeobox 1 isoform X1 [Paramuricea clavata] | Q90277 Visual system homeobox 1 OS=Carassius auratus OX=7957 GN=vsx | JBrowse |
| Paramuricea clavata | CAB3990432.1 | CAB3990432.1 | homeobox unc-4 homolog [Paramuricea clavata] | P29506 Homeobox protein unc-4 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Paramuricea clavata | CAB3997597.1 | CAB3997597.1 | visual system homeobox 2-like [Paramuricea clavata] | Q9IAL1 Visual system homeobox 2 OS=Gallus gallus OX=9031 GN=VSX2 PE | JBrowse |
| Paramuricea clavata | CAB4001093.1 | CAB4001093.1 | Homeobox aristaless-like 4 [Paramuricea clavata] | Q06348 Paired mesoderm homeobox protein 2 OS=Mus musculus OX=10090 | JBrowse |
| Paramuricea clavata | CAB4005706.1 | CAB4005706.1 | partial, partial [Paramuricea clavata] | Q9I9A3 Visual system homeobox 2 OS=Oryzias latipes OX=8090 GN=vsx2 | JBrowse |
| Paramuricea clavata | CAB4007890.1 | CAB4007890.1 | homeobox ARX [Paramuricea clavata] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Paramuricea clavata | CAB4007891.1 | CAB4007891.1 | Homeobox ARX, partial [Paramuricea clavata] | Q26657 Aristaless homeobox protein (Fragment) OS=Strongylocentrotus | JBrowse |
| Paramuricea clavata | CAB4009030.1 | CAB4009030.1 | retinal homeobox Rx1-like [Paramuricea clavata] | O42358 Retinal homeobox protein Rx3 OS=Danio rerio OX=7955 GN=rx3 P | JBrowse |
| Paramuricea clavata | CAB4011138.1 | CAB4011138.1 | homeobox goosecoid [Paramuricea clavata] | O43186 Cone-rod homeobox protein OS=Homo sapiens OX=9606 GN=CRX PE= | JBrowse |
| Paramuricea clavata | CAB4020021.1 | CAB4020021.1 | retinal homeobox Rx1-like isoform X1, partial [Paramuricea clavata] | Q06453 Homeobox protein aristaless OS=Drosophila melanogaster OX=72 | JBrowse |
| Paramuricea clavata | CAB4026050.1 | CAB4026050.1 | Hypothetical predicted protein [Paramuricea clavata] | – | JBrowse |
| Paramuricea clavata | CAB4032863.1 | CAB4032863.1 | Short stature homeobox 2 [Paramuricea clavata] | O35750 Short stature homeobox protein 2 (Fragment) OS=Rattus norveg | JBrowse |
| Paramuricea clavata | CAB4035964.1 | CAB4035964.1 | visual system homeobox 2-like, partial [Paramuricea clavata] | Q0P031 Visual system homeobox 1 OS=Xenopus laevis OX=8355 GN=vsx1 P | JBrowse |
| Paramuricea clavata | CAB4041376.1 | CAB4041376.1 | Hypothetical predicted protein [Paramuricea clavata] | – | JBrowse |
