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This orthogroup contains 650 genes from 148 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 650 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR10625 | HISTONE DEACETYLASE HDAC1-RELATED | 532 / 650 | 81.9% | 94.0% of 566 | ≥80% support |
| Pfam | PF00850 | Hist_deacetyl — Histone deacetylase domain | 557 / 650 | 85.7% | 100.0% of 557 | ≥80% support |
| GO | GO:0004407 Molecular Function | histone deacetylase activity | 548 / 650 | 84.3% | 100.0% of 548 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 532 / 650 | 81.9% | 97.1% of 548 | ≥80% support |
| GO | GO:0016575 Biological Process | obsolete histone deacetylation | 532 / 650 | 81.9% | 97.1% of 548 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 359 / 650 | 55.2% | 65.5% of 548 | ≥50% support |
| GO | GO:0000122 Biological Process | negative regulation of transcription by RNA polymerase II | 352 / 650 | 54.2% | 64.2% of 548 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paramuricea clavata | CAB3987103.1 | CAB3987103.1 | histone deacetylase 8-like [Paramuricea clavata] | Q7SXM0 Histone deacetylase 8 OS=Danio rerio OX=7955 GN=hdac8 PE=2 S | JBrowse |
| Paramuricea clavata | CAB3992772.1 | CAB3992772.1 | histone deacetylase 3-like, partial [Paramuricea clavata] | Q28DV3 Histone deacetylase 3 OS=Xenopus tropicalis OX=8364 GN=hdac3 | JBrowse |
| Paramuricea clavata | CAB3992773.1 | CAB3992773.1 | histone deacetylase 3-like, partial [Paramuricea clavata] | Q28DV3 Histone deacetylase 3 OS=Xenopus tropicalis OX=8364 GN=hdac3 | JBrowse |
| Paramuricea clavata | CAB4002204.1 | CAB4002204.1 | Histone deacetylase 1, partial [Paramuricea clavata] | O42227 Probable histone deacetylase 1-B OS=Xenopus laevis OX=8355 G | JBrowse |
| Paramuricea clavata | CAB4007824.1 | CAB4007824.1 | Histone deacetylase 3, partial [Paramuricea clavata] | Q4SFA0 Histone deacetylase 3 OS=Tetraodon nigroviridis OX=99883 GN= | JBrowse |
| Paramuricea clavata | CAB4007825.1 | CAB4007825.1 | Histone deacetylase 3, partial [Paramuricea clavata] | Q4SFA0 Histone deacetylase 3 OS=Tetraodon nigroviridis OX=99883 GN= | JBrowse |
