← Back to the gene family browser
This orthogroup contains 576 genes from 137 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 576 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11793 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR | 483 / 576 | 83.9% | 100.0% of 483 | ≥80% support |
| GO | GO:0000790 Cellular Component | chromatin | 483 / 576 | 83.9% | 100.0% of 483 | ≥80% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 483 / 576 | 83.9% | 100.0% of 483 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 483 / 576 | 83.9% | 100.0% of 483 | ≥80% support |
| GO | GO:0005667 Cellular Component | transcription regulator complex | 483 / 576 | 83.9% | 100.0% of 483 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 483 / 576 | 83.9% | 100.0% of 483 | ≥80% support |
| GO | GO:0046983 Molecular Function | protein dimerization activity | 468 / 576 | 81.3% | 96.9% of 483 | ≥80% support |
| Pfam | PF00010 | HLH — Helix-loop-helix DNA-binding domain | 460 / 576 | 79.9% | 100.0% of 460 | ≥50% support |
| KEGG | K15603 | TCF4_12 — Transcription factors | 335 / 576 | 58.2% | 100.0% of 335 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paramuricea clavata | CAB4000397.1 | CAB4000397.1 | transcription factor 4 [Paramuricea clavata] | Q28772 Transcription factor 12 (Fragment) OS=Papio hamadryas OX=955 | JBrowse |
| Paramuricea clavata | CAB4009695.1 | CAB4009695.1 | Hypothetical predicted protein, partial [Paramuricea clavata] | – | JBrowse |
| Paramuricea clavata | CAB4009696.1 | CAB4009696.1 | Hypothetical predicted protein, partial [Paramuricea clavata] | – | JBrowse |
| Paramuricea clavata | CAB4033097.1 | CAB4033097.1 | transcription factor 12-like isoform X3, partial [Paramuricea clavata] | Q99081 Transcription factor 12 OS=Homo sapiens OX=9606 GN=TCF12 PE= | JBrowse |
| Paramuricea clavata | CAB4033098.1 | CAB4033098.1 | transcription factor 12-like isoform X3, partial [Paramuricea clavata] | Q99081 Transcription factor 12 OS=Homo sapiens OX=9606 GN=TCF12 PE= | JBrowse |
