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Support counts the member genes carrying the term. % of genes is that count over all 320 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR45997 | DNA LIGASE 4 | 280 / 320 | 87.5% | 99.3% of 282 | ≥80% support |
| GO | GO:0003910 Molecular Function | DNA ligase (ATP) activity | 288 / 320 | 90.0% | 99.7% of 289 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 285 / 320 | 89.1% | 98.6% of 289 | ≥80% support |
| GO | GO:0006281 Biological Process | DNA repair | 285 / 320 | 89.1% | 98.6% of 289 | ≥80% support |
| GO | GO:0005524 Molecular Function | ATP binding | 281 / 320 | 87.8% | 97.2% of 289 | ≥80% support |
| GO | GO:0006297 Biological Process | nucleotide-excision repair, DNA gap filling | 280 / 320 | 87.5% | 96.9% of 289 | ≥80% support |
| GO | GO:0006303 Biological Process | double-strand break repair via nonhomologous end joining | 280 / 320 | 87.5% | 96.9% of 289 | ≥80% support |
| GO | GO:0032807 Cellular Component | DNA ligase IV complex | 280 / 320 | 87.5% | 96.9% of 289 | ≥80% support |
| GO | GO:0051103 Biological Process | DNA ligation involved in DNA repair | 280 / 320 | 87.5% | 96.9% of 289 | ≥80% support |
| GO | GO:0005958 Cellular Component | DNA-dependent protein kinase-DNA ligase 4 complex | 279 / 320 | 87.2% | 96.5% of 289 | ≥80% support |
| GO | GO:0006310 Biological Process | DNA recombination | 265 / 320 | 82.8% | 91.7% of 289 | ≥80% support |
| Pfam | PF01068 | DNA_ligase_A_M — ATP dependent DNA ligase domain | 222 / 320 | 69.4% | 79.6% of 279 | ≥50% support |
| Pfam | PF04679 | DNA_ligase_A_C — ATP dependent DNA ligase C terminal region | 207 / 320 | 64.7% | 74.2% of 279 | ≥50% support |
| Pfam | PF11411 | DNA_ligase_IV — DNA ligase IV | 205 / 320 | 64.1% | 73.5% of 279 | ≥50% support |
| Pfam | PF04675 | DNA_ligase_A_N — DNA ligase N terminus | 203 / 320 | 63.4% | 72.8% of 279 | ≥50% support |
| GO | GO:0071897 Biological Process | DNA biosynthetic process | 180 / 320 | 56.3% | 62.3% of 289 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paramuricea clavata | CAB3983647.1 | CAB3983647.1 | DNA ligase 4, partial [Paramuricea clavata] | Q5R6L3 DNA ligase 4 OS=Pongo abelii OX=9601 GN=LIG4 PE=2 SV=1 | JBrowse |
| Paramuricea clavata | CAB3983648.1 | CAB3983648.1 | DNA ligase 4 [Paramuricea clavata] | Q5R6L3 DNA ligase 4 OS=Pongo abelii OX=9601 GN=LIG4 PE=2 SV=1 | JBrowse |
| Paramuricea clavata | CAB3987149.1 | CAB3987149.1 | DNA ligase 4 [Paramuricea clavata] | Q90YB1 DNA ligase 4 OS=Gallus gallus OX=9031 GN=LIG4 PE=2 SV=2 | JBrowse |
