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This orthogroup contains 275 genes from 140 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 275 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12549 | JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN | 216 / 275 | 78.6% | 99.5% of 217 | ≥50% support |
| Pfam | PF02373 | JmjC | 199 / 275 | 72.4% | 99.5% of 200 | ≥50% support |
| GO | GO:0000118 Cellular Component | histone deacetylase complex | 216 / 275 | 78.6% | 99.5% of 217 | ≥50% support |
| GO | GO:0000785 Cellular Component | chromatin | 216 / 275 | 78.6% | 99.5% of 217 | ≥50% support |
| GO | GO:0003712 Molecular Function | transcription coregulator activity | 216 / 275 | 78.6% | 99.5% of 217 | ≥50% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 216 / 275 | 78.6% | 99.5% of 217 | ≥50% support |
| GO | GO:0031490 Molecular Function | chromatin DNA binding | 216 / 275 | 78.6% | 99.5% of 217 | ≥50% support |
| GO | GO:0032454 Molecular Function | histone H3K9 demethylase activity | 216 / 275 | 78.6% | 99.5% of 217 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paramuricea clavata | CAB3995707.1 | CAB3995707.1 | lysine-specific demethylase 3B, partial, partial [Paramuricea clavata] | Q63679 Lysine-specific demethylase 3A OS=Rattus norvegicus OX=10116 | JBrowse |
| Paramuricea clavata | CAB3995708.1 | CAB3995708.1 | lysine-specific demethylase 3B [Paramuricea clavata] | Q7LBC6 Lysine-specific demethylase 3B OS=Homo sapiens OX=9606 GN=KD | JBrowse |
| Paramuricea clavata | CAB3997445.1 | CAB3997445.1 | Hypothetical predicted protein, partial [Paramuricea clavata] | Q15652 Probable JmjC domain-containing histone demethylation protei | JBrowse |
| Paramuricea clavata | CAB3997446.1 | CAB3997445.1 | Hypothetical predicted protein, partial [Paramuricea clavata] | Q15652 Probable JmjC domain-containing histone demethylation protei | JBrowse |
