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This orthogroup contains 245 genes from 143 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 245 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR22792 | LUPUS LA PROTEIN-RELATED | 185 / 245 | 75.5% | 98.9% of 187 | ≥50% support |
| Pfam | PF21071 | LARP1_HEAT — LARP1 HEAT repeat region | 190 / 245 | 77.6% | 92.2% of 206 | ≥50% support |
| Pfam | PF05383 | La | 171 / 245 | 69.8% | 83.0% of 206 | ≥50% support |
| GO | GO:0000339 Molecular Function | RNA cap binding | 190 / 245 | 77.6% | 91.8% of 207 | ≥50% support |
| GO | GO:0048255 Biological Process | mRNA stabilization | 190 / 245 | 77.6% | 91.8% of 207 | ≥50% support |
| GO | GO:0003723 Molecular Function | RNA binding | 185 / 245 | 75.5% | 89.4% of 207 | ≥50% support |
| GO | GO:0005829 Cellular Component | cytosol | 178 / 245 | 72.7% | 86.0% of 207 | ≥50% support |
| GO | GO:0010494 Cellular Component | cytoplasmic stress granule | 178 / 245 | 72.7% | 86.0% of 207 | ≥50% support |
| GO | GO:0045727 Biological Process | positive regulation of translation | 178 / 245 | 72.7% | 86.0% of 207 | ≥50% support |
| KEGG | K18757 | LARP1 — Messenger RNA biogenesis | 184 / 245 | 75.1% | 98.4% of 187 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paramuricea clavata | CAB4021498.1 | CAB4021498.1 | Hypothetical predicted protein, partial [Paramuricea clavata] | Q6ZQ58 La-related protein 1 OS=Mus musculus OX=10090 GN=Larp1 PE=1 | JBrowse |
| Paramuricea clavata | CAB4021499.1 | CAB4021499.1 | Hypothetical predicted protein, partial [Paramuricea clavata] | – | JBrowse |
| Paramuricea clavata | CAB4022126.1 | CAB4022126.1 | Hypothetical predicted protein, partial [Paramuricea clavata] | Q659C4 La-related protein 1B OS=Homo sapiens OX=9606 GN=LARP1B PE=1 | JBrowse |
| Paramuricea clavata | CAB4038539.1 | CAB4038539.1 | Hypothetical predicted protein [Paramuricea clavata] | – | JBrowse |
