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This orthogroup contains 243 genes from 142 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 243 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11097 | EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN | 194 / 243 | 79.8% | 100.0% of 194 | ≥50% support |
| Pfam | PF01138 | RNase_PH — 3' exoribonuclease family, domain 1 | 189 / 243 | 77.8% | 97.9% of 193 | ≥50% support |
| Pfam | PF03725 | RNase_PH_C — 3' exoribonuclease family, domain 2 | 177 / 243 | 72.8% | 91.7% of 193 | ≥50% support |
| GO | GO:0034476 Biological Process | U5 snRNA 3'-end processing | 194 / 243 | 79.8% | 100.0% of 194 | ≥50% support |
| GO | GO:0071042 Biological Process | nuclear polyadenylation-dependent mRNA catabolic process | 194 / 243 | 79.8% | 100.0% of 194 | ≥50% support |
| GO | GO:0071038 Biological Process | TRAMP-dependent tRNA surveillance pathway | 194 / 243 | 79.8% | 100.0% of 194 | ≥50% support |
| GO | GO:0071035 Biological Process | nuclear polyadenylation-dependent rRNA catabolic process | 194 / 243 | 79.8% | 100.0% of 194 | ≥50% support |
| GO | GO:0071028 Biological Process | nuclear mRNA surveillance | 194 / 243 | 79.8% | 100.0% of 194 | ≥50% support |
| GO | GO:0043928 Biological Process | obsolete exonucleolytic catabolism of deadenylated mRNA | 194 / 243 | 79.8% | 100.0% of 194 | ≥50% support |
| GO | GO:0000176 Cellular Component | nuclear exosome (RNase complex) | 194 / 243 | 79.8% | 100.0% of 194 | ≥50% support |
| GO | GO:0034475 Biological Process | U4 snRNA 3'-end processing | 194 / 243 | 79.8% | 100.0% of 194 | ≥50% support |
| GO | GO:0034473 Biological Process | U1 snRNA 3'-end processing | 194 / 243 | 79.8% | 100.0% of 194 | ≥50% support |
| GO | GO:0034427 Biological Process | obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | 194 / 243 | 79.8% | 100.0% of 194 | ≥50% support |
| GO | GO:0017091 Molecular Function | mRNA 3'-UTR AU-rich region binding | 194 / 243 | 79.8% | 100.0% of 194 | ≥50% support |
| GO | GO:0016075 Biological Process | rRNA catabolic process | 194 / 243 | 79.8% | 100.0% of 194 | ≥50% support |
| GO | GO:0000467 Biological Process | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 194 / 243 | 79.8% | 100.0% of 194 | ≥50% support |
| GO | GO:0000177 Cellular Component | cytoplasmic exosome (RNase complex) | 194 / 243 | 79.8% | 100.0% of 194 | ≥50% support |
| GO | GO:0006396 Biological Process | RNA processing | 183 / 243 | 75.3% | 94.3% of 194 | ≥50% support |
| GO | GO:0000178 Cellular Component | exosome (RNase complex) | 183 / 243 | 75.3% | 94.3% of 194 | ≥50% support |
| KEGG | K03678 | RRP45, EXOSC9 — Messenger RNA biogenesis | 178 / 243 | 73.3% | 98.9% of 180 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paramuricea clavata | CAB4017775.1 | CAB4017775.1 | Exosome complex component RRP45, partial [Paramuricea clavata] | Q5XJQ5 Exosome complex component RRP45 OS=Danio rerio OX=7955 GN=ex | JBrowse |
| Paramuricea clavata | CAB4017776.1 | CAB4017776.1 | exosome complex component RRP45-like, partial [Paramuricea clavata] | Q5XJQ5 Exosome complex component RRP45 OS=Danio rerio OX=7955 GN=ex | JBrowse |
| Paramuricea clavata | CAB4026742.1 | CAB4026742.1 | Exosome complex component RRP45, partial [Paramuricea clavata] | Q3SWZ4 Exosome complex component RRP45 OS=Bos taurus OX=9913 GN=EXO | JBrowse |
| Paramuricea clavata | CAB4026743.1 | CAB4026743.1 | Exosome complex component RRP45 [Paramuricea clavata] | Q3SWZ4 Exosome complex component RRP45 OS=Bos taurus OX=9913 GN=EXO | JBrowse |
