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This orthogroup contains 238 genes from 139 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 238 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12466 | CDC73 DOMAIN PROTEIN | 208 / 238 | 87.4% | 100.0% of 208 | ≥80% support |
| Pfam | PF05179 | CDC73_C — RNA pol II accessory factor, Cdc73 family, C-terminal | 195 / 238 | 81.9% | 92.9% of 210 | ≥80% support |
| GO | GO:0000993 Molecular Function | RNA polymerase II complex binding | 208 / 238 | 87.4% | 100.0% of 208 | ≥80% support |
| GO | GO:0006368 Biological Process | transcription elongation by RNA polymerase II | 208 / 238 | 87.4% | 100.0% of 208 | ≥80% support |
| GO | GO:0016593 Cellular Component | Cdc73/Paf1 complex | 208 / 238 | 87.4% | 100.0% of 208 | ≥80% support |
| GO | GO:0032968 Biological Process | positive regulation of transcription elongation by RNA polymerase II | 208 / 238 | 87.4% | 100.0% of 208 | ≥80% support |
| GO | GO:0034402 Biological Process | obsolete recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex | 208 / 238 | 87.4% | 100.0% of 208 | ≥80% support |
| Pfam | PF16050 | CDC73_N — Paf1 complex subunit CDC73 N-terminal | 182 / 238 | 76.5% | 86.7% of 210 | ≥50% support |
| KEGG | K15175 | CDC73 — Transcription machinery | 171 / 238 | 71.9% | 98.8% of 173 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paramuricea clavata | CAB3992314.1 | CAB3992314.1 | parafibromin isoform X2, partial [Paramuricea clavata] | Q5ZLM0 Parafibromin OS=Gallus gallus OX=9031 GN=CDC73 PE=2 SV=1 | JBrowse |
| Paramuricea clavata | CAB3992315.1 | CAB3992315.1 | parafibromin isoform X2, partial [Paramuricea clavata] | Q5ZLM0 Parafibromin OS=Gallus gallus OX=9031 GN=CDC73 PE=2 SV=1 | JBrowse |
| Paramuricea clavata | CAB4015015.1 | CAB4015015.1 | parafibromin, partial, partial [Paramuricea clavata] | Q6P1J9 Parafibromin OS=Homo sapiens OX=9606 GN=CDC73 PE=1 SV=1 | JBrowse |
| Paramuricea clavata | CAB4015016.1 | CAB4015016.1 | Parafibromin [Paramuricea clavata] | Q6P1J9 Parafibromin OS=Homo sapiens OX=9606 GN=CDC73 PE=1 SV=1 | JBrowse |
