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Support counts the member genes carrying the term. % of genes is that count over all 234 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13112 | UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN | 193 / 234 | 82.5% | 100.0% of 193 | ≥80% support |
| Pfam | PF03467 | Smg4_UPF3 — Smg-4/UPF3 family | 195 / 234 | 83.3% | 100.0% of 195 | ≥80% support |
| GO | GO:0000184 Biological Process | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | 193 / 234 | 82.5% | 99.5% of 194 | ≥80% support |
| GO | GO:0003729 Molecular Function | mRNA binding | 193 / 234 | 82.5% | 99.5% of 194 | ≥80% support |
| GO | GO:0005730 Cellular Component | nucleolus | 193 / 234 | 82.5% | 99.5% of 194 | ≥80% support |
| GO | GO:0005737 Cellular Component | cytoplasm | 193 / 234 | 82.5% | 99.5% of 194 | ≥80% support |
| GO | GO:0045727 Biological Process | positive regulation of translation | 193 / 234 | 82.5% | 99.5% of 194 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 190 / 234 | 81.2% | 97.9% of 194 | ≥80% support |
| KEGG | K14328 | UPF3, RENT3 — Messenger RNA biogenesis | 152 / 234 | 65.0% | 97.4% of 156 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paramuricea clavata | CAB4038169.1 | CAB4038169.1 | regulator of nonsense transcripts 3A, partial [Paramuricea clavata] | Q9BZI7 Regulator of nonsense transcripts 3B OS=Homo sapiens OX=9606 | JBrowse |
