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This orthogroup contains 231 genes from 140 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 231 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12983 | RING FINGER 10 FAMILY MEMBER | 199 / 231 | 86.2% | 100.0% of 199 | ≥80% support |
| GO | GO:0000976 Molecular Function | transcription cis-regulatory region binding | 199 / 231 | 86.2% | 100.0% of 199 | ≥80% support |
| GO | GO:0045944 Biological Process | positive regulation of transcription by RNA polymerase II | 199 / 231 | 86.2% | 100.0% of 199 | ≥80% support |
| Pfam | PF00097 | zf-C3HC4 — Zinc finger, C3HC4 type (RING finger) | 122 / 231 | 52.8% | 69.3% of 176 | ≥50% support |
| GO | GO:0046872 Molecular Function | metal ion binding | 122 / 231 | 52.8% | 61.3% of 199 | ≥50% support |
| KEGG | K26979 | RNF10 — Ubiquitin system | 153 / 231 | 66.2% | 98.1% of 156 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paramuricea clavata | CAB3984534.1 | CAB3984534.1 | RING finger 10, partial [Paramuricea clavata] | Q5XI59 E3 ubiquitin-protein ligase RNF10 OS=Rattus norvegicus OX=10 | JBrowse |
| Paramuricea clavata | CAB3984535.1 | CAB3984535.1 | RING finger 10, partial [Paramuricea clavata] | Q5XI59 E3 ubiquitin-protein ligase RNF10 OS=Rattus norvegicus OX=10 | JBrowse |
| Paramuricea clavata | CAB3984536.1 | CAB3984536.1 | RING finger 10 [Paramuricea clavata] | Q5XI59 E3 ubiquitin-protein ligase RNF10 OS=Rattus norvegicus OX=10 | JBrowse |
