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This orthogroup contains 231 genes from 140 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 231 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11918 | RADICAL SAM PROTEINS | 204 / 231 | 88.3% | 100.0% of 204 | ≥80% support |
| GO | GO:0005783 Cellular Component | endoplasmic reticulum | 204 / 231 | 88.3% | 100.0% of 204 | ≥80% support |
| GO | GO:0035598 Molecular Function | N6-threonylcarbomyladenosine methylthiotransferase activity | 204 / 231 | 88.3% | 100.0% of 204 | ≥80% support |
| GO | GO:0035600 Biological Process | tRNA methylthiolation | 204 / 231 | 88.3% | 100.0% of 204 | ≥80% support |
| Pfam | PF04055 | Radical_SAM — Radical SAM superfamily | 171 / 231 | 74.0% | 88.1% of 194 | ≥50% support |
| Pfam | PF00919 | UPF0004 | 162 / 231 | 70.1% | 83.5% of 194 | ≥50% support |
| Pfam | PF01938 | TRAM | 141 / 231 | 61.0% | 72.7% of 194 | ≥50% support |
| GO | GO:0003824 Molecular Function | catalytic activity | 182 / 231 | 78.8% | 89.2% of 204 | ≥50% support |
| GO | GO:0051536 Molecular Function | iron-sulfur cluster binding | 182 / 231 | 78.8% | 89.2% of 204 | ≥50% support |
| GO | GO:0051539 Molecular Function | 4 iron, 4 sulfur cluster binding | 174 / 231 | 75.3% | 85.3% of 204 | ≥50% support |
| GO | GO:0035596 Molecular Function | methylthiotransferase activity | 168 / 231 | 72.7% | 82.4% of 204 | ≥50% support |
| GO | GO:0006400 Biological Process | tRNA modification | 145 / 231 | 62.8% | 71.1% of 204 | ≥50% support |
| GO | GO:0016740 Molecular Function | transferase activity | 145 / 231 | 62.8% | 71.1% of 204 | ≥50% support |
| KEGG | K15865 | CDKAL1 — Transfer RNA biogenesis | 149 / 231 | 64.5% | 98.7% of 151 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paramuricea clavata | CAB3979430.1 | CAB3979430.1 | threonylcarbamoyladenosine tRNA methylthiotransferase [Paramuricea clavata] | Q6P4Y0 Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xen | JBrowse |
