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This orthogroup contains 221 genes from 139 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 221 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR44163 | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 4 HOMOLOG | 197 / 221 | 89.1% | 100.0% of 197 | ≥80% support |
| GO | GO:0000462 Biological Process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 197 / 221 | 89.1% | 100.0% of 197 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 197 / 221 | 89.1% | 100.0% of 197 | ≥80% support |
| GO | GO:0030686 Cellular Component | 90S preribosome | 197 / 221 | 89.1% | 100.0% of 197 | ≥80% support |
| GO | GO:0032040 Cellular Component | small-subunit processome | 197 / 221 | 89.1% | 100.0% of 197 | ≥80% support |
| GO | GO:0034455 Cellular Component | t-UTP complex | 197 / 221 | 89.1% | 100.0% of 197 | ≥80% support |
| GO | GO:0005515 Molecular Function | protein binding | 189 / 221 | 85.5% | 95.9% of 197 | ≥80% support |
| Pfam | PF00400 | WD40 — WD domain, G-beta repeat | 154 / 221 | 69.7% | 97.5% of 158 | ≥50% support |
| KEGG | K14548 | UTP4, CIRH1A — Ribosome biogenesis | 142 / 221 | 64.3% | 97.9% of 145 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paramuricea clavata | CAB3981632.1 | CAB3981632.1 | U3 small nucleolar RNA-associated 4 homolog [Paramuricea clavata] | Q8R2N2 U3 small nucleolar RNA-associated protein 4 homolog OS=Mus m | JBrowse |
| Paramuricea clavata | CAB3981633.1 | CAB3981633.1 | U3 small nucleolar RNA-associated 4 homolog [Paramuricea clavata] | – | JBrowse |
