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This orthogroup contains 213 genes from 136 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 213 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR23092 | POLY(A) RNA POLYMERASE | 179 / 213 | 84.0% | 99.4% of 180 | ≥80% support |
| Pfam | PF03828 | PAP_assoc — Cid1 family poly A polymerase | 172 / 213 | 80.8% | 96.6% of 178 | ≥80% support |
| GO | GO:0031123 Biological Process | RNA 3'-end processing | 180 / 213 | 84.5% | 100.0% of 180 | ≥80% support |
| GO | GO:0003729 Molecular Function | mRNA binding | 179 / 213 | 84.0% | 99.4% of 180 | ≥80% support |
| GO | GO:0004652 Molecular Function | obsolete polynucleotide adenylyltransferase activity | 179 / 213 | 84.0% | 99.4% of 180 | ≥80% support |
| GO | GO:0005730 Cellular Component | nucleolus | 179 / 213 | 84.0% | 99.4% of 180 | ≥80% support |
| GO | GO:0031499 Cellular Component | TRAMP complex | 179 / 213 | 84.0% | 99.4% of 180 | ≥80% support |
| GO | GO:1990817 Molecular Function | poly(A) RNA polymerase activity | 179 / 213 | 84.0% | 99.4% of 180 | ≥80% support |
| Pfam | PF01909 | NTP_transf_2 — Nucleotidyltransferase domain | 158 / 213 | 74.2% | 88.8% of 178 | ≥50% support |
| GO | GO:0016779 Molecular Function | nucleotidyltransferase activity | 159 / 213 | 74.7% | 88.3% of 180 | ≥50% support |
| KEGG | K03514 | PAPD5_7, TRF4 — Transfer RNA biogenesis | 154 / 213 | 72.3% | 99.4% of 155 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paramuricea clavata | CAB3988237.1 | CAB3988237.1 | non-canonical poly(A) RNA polymerase PAPD5-like [Paramuricea clavata] | Q8NDF8 Terminal nucleotidyltransferase 4B OS=Homo sapiens OX=9606 G | JBrowse |
| Paramuricea clavata | CAB3988238.1 | CAB3988238.1 | non-canonical poly(A) RNA polymerase PAPD5-like [Paramuricea clavata] | Q8NDF8 Terminal nucleotidyltransferase 4B OS=Homo sapiens OX=9606 G | JBrowse |
