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Support counts the member genes carrying the term. % of genes is that count over all 6,131 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 5534 / 6,131 | 90.3% | 100.0% of 5,537 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 5541 / 6,131 | 90.4% | 99.9% of 5,546 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 5489 / 6,131 | 89.5% | 99.0% of 5,546 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 5411 / 6,131 | 88.3% | 97.6% of 5,546 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 4181 / 6,131 | 68.2% | 75.4% of 5,546 | ≥50% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 4143 / 6,131 | 67.6% | 74.7% of 5,546 | ≥50% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 3711 / 6,131 | 60.5% | 66.9% of 5,546 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paragorgia papillata | Ppa0G034740 | XP_028391215.1 | homeobox protein Hox-C6-like [Dendronephthya gigantea] | Q804S6 Homeobox protein EMX1 OS=Danio rerio OX=7955 GN=emx1 PE=2 SV | JBrowse |
| Paragorgia papillata | Ppa0G034760 | CAB3991849.1 | partial [Paramuricea clavata] | Q801E1 Ventral anterior homeobox 2 OS=Danio rerio OX=7955 GN=vax2 P | JBrowse |
| Paragorgia papillata | Ppa0G034770 | CAB3991849.1 | partial [Paramuricea clavata] | P09532 Homeobox protein engrailed (Fragment) OS=Tripneustes gratill | JBrowse |
| Paragorgia papillata | Ppa0G034780 | CAB4006922.1 | not homeobox transcription factor [Paramuricea clavata] | P09020 Homeobox protein Hox-C5 (Fragment) OS=Xenopus laevis OX=8355 | JBrowse |
| Paragorgia papillata | Ppa0G034790 | CAB4006922.1 | not homeobox transcription factor [Paramuricea clavata] | Q04743 Homeobox protein EMX2 OS=Homo sapiens OX=9606 GN=EMX2 PE=1 S | JBrowse |
| Paragorgia papillata | Ppa0G034800 | CAB3980155.1 | homeobox notochord-like [Paramuricea clavata] | O93528 Ventral anterior homeobox 1a OS=Xenopus laevis OX=8355 GN=va | JBrowse |
| Paragorgia papillata | Ppa0G034810 | CAB3980157.1 | ventral anterior homeobox 2 [Paramuricea clavata] | Q9IAX9 Ventral anterior homeobox 2b OS=Xenopus laevis OX=8355 GN=va | JBrowse |
| Paragorgia papillata | Ppa0G035090 | CAB3978885.1 | homeobox HMX3-A [Paramuricea clavata] | Q504H8 Homeobox protein HMX3 OS=Danio rerio OX=7955 GN=hmx3 PE=2 SV | JBrowse |
| Paragorgia papillata | Ppa0G035100 | XP_028391275.1 | homeobox protein slou-like [Dendronephthya gigantea] | Q75W95 NK1 transcription factor-related protein 1 OS=Danio rerio OX | JBrowse |
| Paragorgia papillata | Ppa0G035110 | CAB3978883.1 | nk homeobox 7 [Paramuricea clavata] | P56407 Homeobox protein ceh-9 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Paragorgia papillata | Ppa0G035360 | XP_028391591.1 | homeobox protein Nkx-6.3-like [Dendronephthya gigantea] | A5YC49 Homeobox protein Nkx-6.3 OS=Xenopus laevis OX=8355 GN=nkx6-3 | JBrowse |
| Paragorgia papillata | Ppa0G055030 | CAB4018304.1 | homeobox -like 1, partial [Paramuricea clavata] | Q9UMQ3 Homeobox protein BarH-like 2 OS=Homo sapiens OX=9606 GN=BARX | JBrowse |
| Paragorgia papillata | Ppa0G102250 | XP_032228794.2 | homeobox protein engrailed-like ceh-16 [Nematostella vectensis] | P26797 Homeobox protein ceh-19 OS=Caenorhabditis elegans OX=6239 GN | JBrowse |
| Paragorgia papillata | Ppa0G128910 | CAB4018055.1 | homeobox MOX-1 [Paramuricea clavata] | P26797 Homeobox protein ceh-19 OS=Caenorhabditis elegans OX=6239 GN | JBrowse |
| Paragorgia papillata | Ppa0G148910 | XP_028410183.1 | homeobox protein Hox-A9-like [Dendronephthya gigantea] | P15860 Homeobox protein H90 (Fragment) OS=Apis mellifera OX=7460 PE | JBrowse |
| Paragorgia papillata | Ppa0G148920 | XP_028410064.1 | homeobox protein Hox-B3-like [Dendronephthya gigantea] | P31247 Homeobox protein Hox-B3 (Fragment) OS=Xenopus laevis OX=8355 | JBrowse |
| Paragorgia papillata | Ppa0G148940 | XP_046846976.1 | homeobox protein Hox-D3-like [Xenia sp. Carnegie-2017] | P31249 Homeobox protein Hox-D3 OS=Homo sapiens OX=9606 GN=HOXD3 PE= | JBrowse |
| Paragorgia papillata | Ppa0G148950 | XP_028418707.1 | homeobox protein Hox-B5b-like [Dendronephthya gigantea] | P15860 Homeobox protein H90 (Fragment) OS=Apis mellifera OX=7460 PE | JBrowse |
| Paragorgia papillata | Ppa0G148960 | XP_028401490.1 | homeobox protein Hox-A7-like [Dendronephthya gigantea] | Q28600 Homeobox protein Hox-A7 (Fragment) OS=Ovis aries OX=9940 GN= | JBrowse |
| Paragorgia papillata | Ppa0G158260 | XP_046845136.1 | homeobox protein DLX-2-like [Xenia sp. Carnegie-2017] | P20269 Homeobox protein ceh-5 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
