← Back to the gene family browser
This orthogroup contains 1,377 genes from 148 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 1,377 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RINGv — RING-variant domain | 1216 / 1,377 | 88.3% | 99.7% of 1,220 | ≥80% support |
| GO | GO:0008270 Molecular Function | zinc ion binding | 1216 / 1,377 | 88.3% | 99.2% of 1,226 | ≥80% support |
| PANTHER | PTHR46065 | E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER | 1023 / 1,377 | 74.3% | 83.7% of 1,223 | ≥50% support |
| GO | GO:0004842 Molecular Function | ubiquitin-protein transferase activity | 906 / 1,377 | 65.8% | 73.9% of 1,226 | ≥50% support |
| GO | GO:0016567 Biological Process | protein ubiquitination | 906 / 1,377 | 65.8% | 73.9% of 1,226 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paragorgia papillata | Ppa0G028020 | CAB3994763.1 | E3 ubiquitin- ligase MARCH8-like [Paramuricea clavata] | Q8TCQ1 E3 ubiquitin-protein ligase MARCHF1 OS=Homo sapiens OX=9606 | JBrowse |
| Paragorgia papillata | Ppa0G291620 | XP_028405026.1 | E3 ubiquitin-protein ligase MARCH4-like [Dendronephthya gigantea] | Q6ZQ89 E3 ubiquitin-protein ligase MARCHF6 OS=Mus musculus OX=10090 | JBrowse |
| Paragorgia papillata | Ppa0G337950 | CAB3976542.1 | E3 ubiquitin- ligase MARCH4-like [Paramuricea clavata] | Q6ZQ89 E3 ubiquitin-protein ligase MARCHF6 OS=Mus musculus OX=10090 | JBrowse |
| Paragorgia papillata | Ppa0G338910 | XP_032237398.1 | E3 ubiquitin-protein ligase MARCHF8 [Nematostella vectensis] | Q8TCQ1 E3 ubiquitin-protein ligase MARCHF1 OS=Homo sapiens OX=9606 | JBrowse |
| Paragorgia papillata | Ppa0G339910 | CAB3986923.1 | E3 ubiquitin- ligase MARCH1-like isoform X1 [Paramuricea clavata] | Q0VD59 E3 ubiquitin-protein ligase MARCHF8 OS=Bos taurus OX=9913 GN | JBrowse |
| Paragorgia papillata | Ppa0G365010 | CAB3994472.1 | E3 ubiquitin- ligase MARCH2 [Paramuricea clavata] | Q1LVZ2 E3 ubiquitin-protein ligase MARCHF2 OS=Danio rerio OX=7955 G | JBrowse |
