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Support counts the member genes carrying the term. % of genes is that count over all 868 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 766 / 868 | 88.3% | 100.0% of 766 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 767 / 868 | 88.4% | 100.0% of 767 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 766 / 868 | 88.3% | 99.9% of 767 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paragorgia papillata | Ppa0G012820 | XP_046859827.1 | putative RNA-binding protein RbpE [Xenia sp. Carnegie-2017] | Q9PTX2 Cold-inducible RNA-binding protein OS=Aquarana catesbeiana O | JBrowse |
| Paragorgia papillata | Ppa0G098940 | XP_015221074.1 | PREDICTED: cold-inducible RNA-binding protein isoform X2 [Lepisosteus oculatus] | Q9DED4 Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=83 | JBrowse |
| Paragorgia papillata | Ppa0G098950 | XP_028393880.1 | glycine-rich RNA-binding protein-like [Dendronephthya gigantea] | O93235 Cold-inducible RNA-binding protein A OS=Xenopus laevis OX=83 | JBrowse |
| Paragorgia papillata | Ppa0G098960 | HID21866.1 | RNA-binding protein [Planctomycetaceae bacterium] | Q28IQ9 Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX= | JBrowse |
| Paragorgia papillata | Ppa0G098970 | MBO6935460.1 | RNA-binding protein [Deltaproteobacteria bacterium] | Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabido | JBrowse |
| Paragorgia papillata | Ppa0G098980 | CAB3992072.1 | RNA-binding [Paramuricea clavata] | Q14011 Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 G | JBrowse |
| Paragorgia papillata | Ppa0G098990 | XP_028393879.1 | uncharacterized protein LOC114518142 [Dendronephthya gigantea] | Q9PTX2 Cold-inducible RNA-binding protein OS=Aquarana catesbeiana O | JBrowse |
| Paragorgia papillata | Ppa0G155870 | XP_046859827.1 | putative RNA-binding protein RbpE [Xenia sp. Carnegie-2017] | Q9PTX2 Cold-inducible RNA-binding protein OS=Aquarana catesbeiana O | JBrowse |
| Paragorgia papillata | Ppa0G156090 | XP_046859827.1 | putative RNA-binding protein RbpE [Xenia sp. Carnegie-2017] | Q9PTX2 Cold-inducible RNA-binding protein OS=Aquarana catesbeiana O | JBrowse |
| Paragorgia papillata | Ppa0G165080 | XP_028418255.1 | SRA stem-loop-interacting RNA-binding protein, mitochondrial-like [Dendronephthya gigantea] | Q99020 Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus | JBrowse |
