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This orthogroup contains 259 genes from 135 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 259 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR48033 | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 223 / 259 | 86.1% | 99.6% of 224 | ≥80% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 225 / 259 | 86.9% | 97.0% of 232 | ≥80% support |
| Pfam | PF18694 | TDP43_N — TAR DNA-binding protein 43, N-terminal domain | 215 / 259 | 83.0% | 92.7% of 232 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 227 / 259 | 87.6% | 100.0% of 227 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 226 / 259 | 87.3% | 99.6% of 227 | ≥80% support |
| GO | GO:0000790 Cellular Component | chromatin | 223 / 259 | 86.1% | 98.2% of 227 | ≥80% support |
| GO | GO:0005654 Cellular Component | nucleoplasm | 223 / 259 | 86.1% | 98.2% of 227 | ≥80% support |
| GO | GO:0010468 Biological Process | regulation of gene expression | 223 / 259 | 86.1% | 98.2% of 227 | ≥80% support |
| KEGG | K23600 | TARDBP, TDP43 — Messenger RNA biogenesis | 207 / 259 | 79.9% | 99.0% of 209 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paragorgia papillata | Ppa0G106130 | CAB3998235.1 | TAR DNA-binding 43 [Paramuricea clavata] | Q28F51 TAR DNA-binding protein 43 OS=Xenopus tropicalis OX=8364 GN= | JBrowse |
