← Back to the gene family browser
This orthogroup contains 228 genes from 138 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 228 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR21227 | TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 | 194 / 228 | 85.1% | 98.5% of 197 | ≥80% support |
| GO | GO:0006388 Biological Process | tRNA splicing, via endonucleolytic cleavage and ligation | 197 / 228 | 86.4% | 99.0% of 199 | ≥80% support |
| GO | GO:0000213 Molecular Function | tRNA-intron endonuclease activity | 195 / 228 | 85.5% | 98.0% of 199 | ≥80% support |
| GO | GO:0000214 Cellular Component | tRNA-intron endonuclease complex | 194 / 228 | 85.1% | 97.5% of 199 | ≥80% support |
| GO | GO:0000379 Biological Process | tRNA-type intron splice site recognition and cleavage | 194 / 228 | 85.1% | 97.5% of 199 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 185 / 228 | 81.1% | 93.0% of 199 | ≥80% support |
| Pfam | PF01974 | tRNA_int_endo — tRNA intron endonuclease, catalytic C-terminal domain | 167 / 228 | 73.3% | 94.9% of 176 | ≥50% support |
| KEGG | K15322 | TSEN2 — Transfer RNA biogenesis | 148 / 228 | 64.9% | 98.7% of 150 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paragorgia papillata | Ppa0G246390 | XP_028404250.1 | tRNA-splicing endonuclease subunit Sen2-like [Dendronephthya gigantea] | Q5M954 tRNA-splicing endonuclease subunit Sen2 OS=Rattus norvegicus | JBrowse |
