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This orthogroup contains 219 genes from 133 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 219 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR22792 | LUPUS LA PROTEIN-RELATED | 181 / 219 | 82.7% | 100.0% of 181 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 181 / 219 | 82.7% | 98.9% of 183 | ≥80% support |
| GO | GO:0003730 Molecular Function | mRNA 3'-UTR binding | 181 / 219 | 82.7% | 98.9% of 183 | ≥80% support |
| GO | GO:0005829 Cellular Component | cytosol | 181 / 219 | 82.7% | 98.9% of 183 | ≥80% support |
| GO | GO:0010494 Cellular Component | cytoplasmic stress granule | 181 / 219 | 82.7% | 98.9% of 183 | ≥80% support |
| GO | GO:0045727 Biological Process | positive regulation of translation | 181 / 219 | 82.7% | 98.9% of 183 | ≥80% support |
| Pfam | PF05383 | La | 165 / 219 | 75.3% | 98.2% of 168 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 149 / 219 | 68.0% | 81.4% of 183 | ≥50% support |
| KEGG | K18763 | LARP4 — Messenger RNA biogenesis | 154 / 219 | 70.3% | 97.5% of 158 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paragorgia papillata | Ppa0G305630 | CAB3992916.1 | la-related CG11505 isoform X1 [Paramuricea clavata] | Q9I7T7 La-related protein Larp4B OS=Drosophila melanogaster OX=7227 | JBrowse |
