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This orthogroup contains 196 genes from 136 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 196 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR23338 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM | 178 / 196 | 90.8% | 99.4% of 179 | ≥80% support |
| Pfam | PF01423 | LSM | 177 / 196 | 90.3% | 100.0% of 177 | ≥80% support |
| GO | GO:0000387 Biological Process | spliceosomal snRNP assembly | 179 / 196 | 91.3% | 100.0% of 179 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 179 / 196 | 91.3% | 100.0% of 179 | ≥80% support |
| GO | GO:0005682 Cellular Component | U5 snRNP | 178 / 196 | 90.8% | 99.4% of 179 | ≥80% support |
| GO | GO:0005685 Cellular Component | U1 snRNP | 178 / 196 | 90.8% | 99.4% of 179 | ≥80% support |
| GO | GO:0005686 Cellular Component | U2 snRNP | 178 / 196 | 90.8% | 99.4% of 179 | ≥80% support |
| GO | GO:0005687 Cellular Component | U4 snRNP | 178 / 196 | 90.8% | 99.4% of 179 | ≥80% support |
| GO | GO:0005689 Cellular Component | U12-type spliceosomal complex | 178 / 196 | 90.8% | 99.4% of 179 | ≥80% support |
| GO | GO:0006396 Biological Process | RNA processing | 178 / 196 | 90.8% | 99.4% of 179 | ≥80% support |
| GO | GO:0034715 Cellular Component | pICln-Sm protein complex | 178 / 196 | 90.8% | 99.4% of 179 | ≥80% support |
| GO | GO:0034719 Cellular Component | SMN-Sm protein complex | 178 / 196 | 90.8% | 99.4% of 179 | ≥80% support |
| GO | GO:0071011 Cellular Component | precatalytic spliceosome | 178 / 196 | 90.8% | 99.4% of 179 | ≥80% support |
| GO | GO:0071013 Cellular Component | catalytic step 2 spliceosome | 178 / 196 | 90.8% | 99.4% of 179 | ≥80% support |
| GO | GO:0097526 Cellular Component | spliceosomal tri-snRNP complex | 178 / 196 | 90.8% | 99.4% of 179 | ≥80% support |
| GO | GO:0000243 Cellular Component | commitment complex | 178 / 196 | 90.8% | 99.4% of 179 | ≥80% support |
| KEGG | K11087 | SNRPD1, SMD1 — DNA replication proteins | 155 / 196 | 79.1% | 100.0% of 155 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paragorgia papillata | Ppa0G373970 | CAB3982246.1 | small nuclear ribonucleo Sm D1 [Paramuricea clavata] | Q9VU02 Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila | JBrowse |
