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This orthogroup contains 166 genes from 135 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 166 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13110 | U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 | 151 / 166 | 91.0% | 100.0% of 151 | ≥80% support |
| Pfam | PF01423 | LSM | 150 / 166 | 90.4% | 100.0% of 150 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 151 / 166 | 91.0% | 100.0% of 151 | ≥80% support |
| GO | GO:0000932 Cellular Component | P-body | 151 / 166 | 91.0% | 100.0% of 151 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 151 / 166 | 91.0% | 100.0% of 151 | ≥80% support |
| GO | GO:0005688 Cellular Component | U6 snRNP | 151 / 166 | 91.0% | 100.0% of 151 | ≥80% support |
| GO | GO:0033962 Biological Process | P-body assembly | 151 / 166 | 91.0% | 100.0% of 151 | ≥80% support |
| GO | GO:0046540 Cellular Component | U4/U6 x U5 tri-snRNP complex | 151 / 166 | 91.0% | 100.0% of 151 | ≥80% support |
| GO | GO:0071011 Cellular Component | precatalytic spliceosome | 151 / 166 | 91.0% | 100.0% of 151 | ≥80% support |
| GO | GO:0071013 Cellular Component | catalytic step 2 spliceosome | 151 / 166 | 91.0% | 100.0% of 151 | ≥80% support |
| GO | GO:1990726 Cellular Component | Lsm1-7-Pat1 complex | 151 / 166 | 91.0% | 100.0% of 151 | ≥80% support |
| KEGG | K12622 | LSM3 — Spliceosome | 137 / 166 | 82.5% | 100.0% of 137 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paragorgia papillata | Ppa0G167520 | XP_028410837.1 | U6 snRNA-associated Sm-like protein LSm3 [Dendronephthya gigantea] | Q32PE9 U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=99 | JBrowse |
