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Support counts the member genes carrying the term. % of genes is that count over all 6,131 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 5534 / 6,131 | 90.3% | 100.0% of 5,537 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 5541 / 6,131 | 90.4% | 99.9% of 5,546 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 5489 / 6,131 | 89.5% | 99.0% of 5,546 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 5411 / 6,131 | 88.3% | 97.6% of 5,546 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 4181 / 6,131 | 68.2% | 75.4% of 5,546 | ≥50% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 4143 / 6,131 | 67.6% | 74.7% of 5,546 | ≥50% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 3711 / 6,131 | 60.5% | 66.9% of 5,546 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Pachyseris speciosa | pspe_0.1.m1.16851.m1 | KAJ7381300.1 | hypothetical protein OS493_001421 [Desmophyllum pertusum] | Q22910 Homeobox protein ceh-31 OS=Caenorhabditis elegans OX=6239 GN | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.16857.m1 | XP_020613618.1 | homeobox protein not2-like [Orbicella faveolata] | Q04743 Homeobox protein EMX2 OS=Homo sapiens OX=9606 GN=EMX2 PE=1 S | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.16863.m1 | KAJ7381300.1 | hypothetical protein OS493_001421 [Desmophyllum pertusum] | O43763 T-cell leukemia homeobox protein 2 OS=Homo sapiens OX=9606 G | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.16867.m1 | XP_020613618.1 | homeobox protein not2-like [Orbicella faveolata] | O43763 T-cell leukemia homeobox protein 2 OS=Homo sapiens OX=9606 G | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.18849.m1 | XP_020623784.1 | homeobox protein MSX-3-like isoform X1 [Orbicella faveolata] | Q04281 Homeobox protein XHOX-7.1 (Fragment) OS=Xenopus laevis OX=83 | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.20663.m1 | XP_020616682.1 | homeobox protein Hox-B7-B-like [Orbicella faveolata] | P81192 Homeobox protein Hox-A4 (Fragment) OS=Lineus sanguineus OX=1 | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.21576.m1 | KAJ7381300.1 | hypothetical protein OS493_001421 [Desmophyllum pertusum] | Q06615 Homeobox protein notochord OS=Xenopus laevis OX=8355 GN=noto | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.21578.m1 | KAJ7381300.1 | hypothetical protein OS493_001421 [Desmophyllum pertusum] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.21579.m1 | KAJ7381300.1 | hypothetical protein OS493_001421 [Desmophyllum pertusum] | Q06615 Homeobox protein notochord OS=Xenopus laevis OX=8355 GN=noto | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.26159.m1 | XP_020614362.1 | barH-like 2 homeobox protein isoform X1 [Orbicella faveolata] | P56407 Homeobox protein ceh-9 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.29012.m1 | XP_020612724.1 | homeobox protein ceh-30-like [Orbicella faveolata] | Q6GLB9 Homeobox protein EMX1 OS=Xenopus tropicalis OX=8364 GN=emx1 | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.29016.m1 | CAH3043509.1 | unnamed protein product [Porites lobata] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.29634.m1 | KAJ7381300.1 | hypothetical protein OS493_001421 [Desmophyllum pertusum] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.29636.m1 | XP_020621171.1 | homeobox protein ceh-19-like [Orbicella faveolata] | – | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.29653.m1 | CAH3125653.1 | unnamed protein product [Porites lobata] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.29660.m1 | XP_020614252.1 | ventral anterior homeobox 1-like [Orbicella faveolata] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.32391.m1 | XP_020619117.1 | homeobox protein Nkx-6.1-like [Orbicella faveolata] | Q06615 Homeobox protein notochord OS=Xenopus laevis OX=8355 GN=noto | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.34246.m1 | XP_020627880.1 | homeobox protein Nkx-6.1-like [Orbicella faveolata] | Q60554 Homeobox protein Nkx-6.1 OS=Mesocricetus auratus OX=10036 GN | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.35679.m1 | XP_020632211.1 | homeobox protein Nkx-3.1-like [Orbicella faveolata] | P56407 Homeobox protein ceh-9 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Pachyseris speciosa | pspe_0.1.m1.35693.m1 | XP_020632211.1 | homeobox protein Nkx-3.1-like [Orbicella faveolata] | Q28ET4 Homeobox protein vent1 OS=Xenopus tropicalis OX=8364 GN=vent | JBrowse |
