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Support counts the member genes carrying the term. % of genes is that count over all 35 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR30537 | HTH-TYPE TRANSCRIPTIONAL REGULATOR | 30 / 35 | 85.7% | 93.8% of 32 | ≥80% support |
| Pfam | PF03466 | LysR_substrate — LysR substrate binding domain | 31 / 35 | 88.6% | 96.9% of 32 | ≥80% support |
| Pfam | PF00126 | HTH_1 — Bacterial regulatory helix-turn-helix protein, lysR family | 29 / 35 | 82.9% | 90.6% of 32 | ≥80% support |
| GO | GO:0003700 Molecular Function | DNA-binding transcription factor activity | 32 / 35 | 91.4% | 97.0% of 33 | ≥80% support |
| GO | GO:0006351 Biological Process | DNA-templated transcription | 30 / 35 | 85.7% | 90.9% of 33 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 30 / 35 | 85.7% | 90.9% of 33 | ≥80% support |
| GO | GO:0043565 Molecular Function | sequence-specific DNA binding | 30 / 35 | 85.7% | 90.9% of 33 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Hydra oligactis | HOLI00001.G53537 | WP_175653265.1 | LysR substrate-binding domain-containing protein [Pseudomonas sp. Marseille-P9899] | P34818 HTH-type transcriptional regulator TrpI OS=Pseudomonas syrin | JBrowse |
| Hydra oligactis | HOLI00014.G9676 | WP_105261834.1 | LysR substrate-binding domain-containing protein [Rhodoferax sp. TS-BS-61-7] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI00014.G9873 | WP_236635221.1 | LysR substrate-binding domain-containing protein [Rhodoferax sp. TS-BS-61-7] | – | JBrowse |
| Hydra oligactis | HOLI00150.G1865 | WP_105262420.1 | LysR substrate-binding domain-containing protein [Rhodoferax sp. TS-BS-61-7] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI00264.G3423 | WP_095598137.1 | transcriptional regulator GcvA [Pseudomonas sp. PIC25] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI00522.G16908 | TXH94418.1 | transcriptional regulator GcvA [Rheinheimera sp.] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI00643.G15845 | WP_094289825.1 | LysR substrate-binding domain-containing protein [Acidovorax kalamii] | P11720 HTH-type transcriptional regulator TrpI OS=Pseudomonas aerug | JBrowse |
| Hydra oligactis | HOLI01087.G37600 | ABA51107.1 | hypothetical protein BURPS1710b_3413 [Burkholderia pseudomallei 1710b] | – | JBrowse |
| Hydra oligactis | HOLI01087.G37601 | WP_055394664.1 | MULTISPECIES: LysR substrate-binding domain-containing protein [Acidovorax] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI01423.G1610 | MBW8463068.1 | LysR family transcriptional regulator [Acidovorax sp.] | – | JBrowse |
| Hydra oligactis | HOLI02150.G23153 | MBT9513442.1 | DNA oxidative demethylase AlkB [Acidovorax sp.] | P37462 Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Salmonella | JBrowse |
| Hydra oligactis | HOLI02969.G47698 | RZJ51529.1 | MAG: LysR family transcriptional regulator, partial [Acidovorax sp.] | – | JBrowse |
| Thelohanellus kitauei | KII60451.1 | none | – | JBrowse | |
| Thelohanellus kitauei | KII62195.1 | none | – | JBrowse | |
| Thelohanellus kitauei | KII62197.1 | none | – | JBrowse |
