Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD009253

SpeciesExaiptasia pallida
TissueIndividuals (symbiosis)
PRIDE accessionPXD009253
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins559
Peptides (q≤0.01)1673
PSMs (q≤0.01)2523
reprocessed against the CnidoSite reference proteome
5 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ20914.1 EDIAP_KXJ20914.1 3 1 2.7 590 0.00150263 hypothetical protein AC249_AIPGENE28938 [Exaiptasia diaphana]
KXJ22118.1 EDIAP_KXJ22118.1 3 1 6.6 212 0.000882613 Paraplegin [Exaiptasia diaphana]
KXJ22200.1 EDIAP_KXJ22200.1 3 1 5.7 175 0.000882613 Aggrecan core protein [Exaiptasia diaphana]
KXJ04754.1 EDIAP_KXJ04754.1 2 1 12.7 126 0.00354359 hypothetical protein AC249_AIPGENE4624, partial [Exaiptasia diaphana]
KXJ05557.1 EDIAP_KXJ05557.1 2 1 6.7 149 0.000882613 Vesicular inhibitory amino acid transporter, partial [Exaiptasia diaphana]
KXJ06053.1 EDIAP_KXJ06053.1 2 1 10.8 158 0.000882613 hypothetical protein AC249_AIPGENE1924, partial [Exaiptasia diaphana]
KXJ08713.1 EDIAP_KXJ08713.1 2 1 4.1 243 0.00150263 Tubulin delta chain [Exaiptasia diaphana]
KXJ09059.1 EDIAP_KXJ09059.1 2 1 2.7 296 0.00581771 Zinc finger protein 75D [Exaiptasia diaphana]
KXJ09076.1 EDIAP_KXJ09076.1 2 1 4.5 242 0.000882613 Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [Exaiptasia diaphana]
KXJ09413.1 EDIAP_KXJ09413.1 2 1 6.2 305 0.000882613 hypothetical protein AC249_AIPGENE28641 [Exaiptasia diaphana]
KXJ10595.1 EDIAP_KXJ10595.1 2 1 2.2 579 0.000882613 Angiopoietin-4 [Exaiptasia diaphana]
KXJ11612.1 EDIAP_KXJ11612.1 2 1 8.8 215 0.000882613 hypothetical protein AC249_AIPGENE10558 [Exaiptasia diaphana]
KXJ11695.1 EDIAP_KXJ11695.1 2 1 3.5 376 0.000882613 EKC/KEOPS complex subunit TPRKB [Exaiptasia diaphana]
KXJ11712.1 EDIAP_KXJ11712.1 2 1 15.2 99 0.000882613 Platelet glycoprotein Ib alpha chain [Exaiptasia diaphana]
KXJ12327.1 EDIAP_KXJ12327.1 2 1 0.9 1305 0.000882613 PHD finger protein 13 [Exaiptasia diaphana]
KXJ13257.1 EDIAP_KXJ13257.1 2 1 9.4 223 0.000882613 DNA-directed RNA polymerase II subunit RPB2 [Exaiptasia diaphana]
KXJ13595.1 EDIAP_KXJ13595.1 2 1 3.5 517 0.000882613 Double-stranded RNA-binding protein 1 [Exaiptasia diaphana]
KXJ14301.1 EDIAP_KXJ14301.1 2 1 6.6 288 0.000882613 Zinc metalloproteinase nas-15 [Exaiptasia diaphana]
KXJ14910.1 EDIAP_KXJ14910.1 2 1 4 297 0.000882613 Lysine-specific histone demethylase 1B [Exaiptasia diaphana]
KXJ15741.1 EDIAP_KXJ15741.1 2 1 6 298 0.000882613 Mediator of RNA polymerase II transcription subunit 24 [Exaiptasia diaphana]
KXJ16205.1 EDIAP_KXJ16205.1 2 1 11.4 123 0.000882613 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Exaiptasia diaphana]
KXJ16951.1 EDIAP_KXJ16951.1 2 1 2.9 594 0.000882613 Major facilitator superfamily domain-containing protein 6 [Exaiptasia diaphana]
KXJ17574.1 EDIAP_KXJ17574.1 2 1 10.6 113 0.000882613 Histamine H2 receptor [Exaiptasia diaphana]
KXJ18297.1 EDIAP_KXJ18297.1 2 1 4.3 305 0.000882613 hypothetical protein AC249_AIPGENE23477 [Exaiptasia diaphana]
KXJ18313.1 EDIAP_KXJ18313.1 2 1 15.5 129 0.00626959 Lysine-specific demethylase 4A [Exaiptasia diaphana]
Total protein records: 559  (+5 contaminants hidden)
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