Proteomic Data

Proteomic Data

This module lists 23 proteomic datasets covering 4 cnidarian classes and 10 species, with tissue, treatment, data source and reference for each. Raw files were retrieved from the PRIDE Archive and, where a CnidoSite reference proteome is available for the species, re-processed through a single documented pipeline (Comet 2026.01 + Percolator, 1% PSM-level FDR) so that identifications are directly comparable across datasets and link to CnidoSite gene pages. The column Status states what was possible for each dataset; the column Proteins gives the number of gene-linked proteins in the current release.

23Datasets

17Re-processed

24,962Gene-linked proteins

0No reference proteome

1PSMs only, no peptides at 1%

5Searched, no IDs at 1% FDR

0Queued

Class	Species	Tissue	Treatment	Data Source	Reference	Status	Proteins	Browse
Hexacorallia	Actinia fragacea Surrogate species	nematocysts, various tissues	-	PXD060643	39997203	Re-processed	4,572	proteins details
Hexacorallia	Exaiptasia diaphana	Symbiont Breviolum minutum	Symbiosis establishment	PXD045585	38988135	Re-processed	3,451	proteins details
Hexacorallia	Exaiptasia diaphana	Symbiont Durusdinium trenchii	Symbiosis establishment	PXD045587	38988135	Re-processed	2,805	proteins details
Hexacorallia	Exaiptasia diaphana	Cyst structure	Host-Parasite Infection	PXD051329	38891869	Re-processed	298	proteins details
Hexacorallia	Exaiptasia pallida	Individuals (symbiosis)	-	PXD009253	31118473	Re-processed	559	proteins details
Hexacorallia	Nematostella vectensis	Embryos	-	PXD033068	35999597	Re-processed	3,673	proteins details
Hexacorallia	Nematostella vectensis	Larvae/PrimaryPolyps/Juveniles	Starved for 2 days	PXD041235	38727714	Re-processed	385	proteins details
Hexacorallia	Orbicella annularis Transcriptome	Coral skeleton	-	PXD017756	–	PSMs only, no peptides at 1%	–	n/a
Hexacorallia	Orbicella annularis Transcriptome	Coral skeleton	-	PXD017813	–	Searched, no IDs at 1% FDR	–	n/a
Hexacorallia	Orbicella annularis Transcriptome	Coral skeleton	-	PXD017814	–	Re-processed	65	proteins details
Hexacorallia	Orbicella annularis Transcriptome	Coral skeleton	-	PXD017815	–	Searched, no IDs at 1% FDR	–	n/a
Hexacorallia	Orbicella annularis Transcriptome	Coral skeleton	-	PXD017816	–	Re-processed	18	proteins details
Hexacorallia	Orbicella annularis Transcriptome	Coral skeleton	-	PXD017876	–	Re-processed	17	proteins details
Hexacorallia	Orbicella annularis Transcriptome	Coral skeleton	-	PXD017877	–	Searched, no IDs at 1% FDR	–	n/a
Hexacorallia	Orbicella annularis Transcriptome	Coral skeleton	-	PXD017878	–	Re-processed	21	proteins details
Hexacorallia	Orbicella annularis Transcriptome	Coral skeleton	-	PXD017879	–	Searched, no IDs at 1% FDR	–	n/a
Hexacorallia	Orbicella annularis Transcriptome	Coral skeleton	-	PXD017880	–	Re-processed	21	proteins details
Hexacorallia	Zoanthus natalensis Surrogate species	colony	-	PXD010839	31203412	Re-processed	3,675	proteins details
Hydrozoa	Hydra vulgaris	Extracellular vesicles (whole animal culture)	Starved for 4 days	PXD027774	34988080	Searched, no IDs at 1% FDR	–	n/a
Myxozoa	Ceratonova shasta Transcriptome	Developmental stages (in Ascites fluid)	Infection in Rainbow Trout	PXD022770	Link	Re-processed	2,239	proteins details
Myxozoa	Myxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii Combined DB	Nematocysts (cysts)	-	PXD018851	32637811	Re-processed	1,386	proteins details
Myxozoa	Myxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii Combined DB	Nematocysts	-	PXD030136	35053089	Re-processed	1,669	proteins details
Octocorallia	Corallium rubrum Transcriptome	Coral skeleton	-	PXD020332	33514311	Re-processed	108	proteins details

Showing 23 of 23 datasets.

Why some datasets carry no protein counts. A dataset can only be searched against a reference proteome. Where CnidoSite does not yet hold a reference proteome for the species (for example Corallium rubrum, Antipathes griggi, Polypodium hydriforme or Buddenbrockia bryozoides), or where the original study relied on a bespoke assembly that cannot be reconstructed, the dataset is listed with its provenance but without re-processed identifications rather than being searched against a surrogate species, which would produce misleading matches. These datasets are flagged as No reference proteome and are the priority for future reference-proteome construction.