Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD009253

SpeciesExaiptasia pallida
TissueIndividuals (symbiosis)
PRIDE accessionPXD009253
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins559
Peptides (q≤0.01)1673
PSMs (q≤0.01)2523
reprocessed against the CnidoSite reference proteome
5 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ17389.1 EDIAP_KXJ17389.1 61 39 12.8 2825 0.000882613 hypothetical protein AC249_AIPGENE23779 [Exaiptasia diaphana]
KXJ26779.1 EDIAP_KXJ26779.1 51 34 58.5 520 0.000882613 hypothetical protein AC249_AIPGENE26430 [Exaiptasia diaphana]
KXJ10693.1 EDIAP_KXJ10693.1 44 28 51 341 0.000882613 Protein mab-21-like 2 [Exaiptasia diaphana]
KXJ28063.1 EDIAP_KXJ28063.1 39 27 66.1 363 0.000882613 Mitogen-activated protein kinase kinase kinase kinase 5 [Exaiptasia diaphana]
KXJ11682.1 EDIAP_KXJ11682.1 48 26 29.5 376 0.000882613 Beta-glucuronidase [Exaiptasia diaphana]
KXJ09142.1 EDIAP_KXJ09142.1 47 26 60.3 478 0.000882613 hypothetical protein AC249_AIPGENE15663 [Exaiptasia diaphana]
KXJ18066.1 EDIAP_KXJ18066.1 30 21 45.6 509 0.000882613 hypothetical protein AC249_AIPGENE21454 [Exaiptasia diaphana]
KXJ23430.1 EDIAP_KXJ23430.1 39 19 82.9 164 0.000882613 Tetratricopeptide repeat protein 38 [Exaiptasia diaphana]
KXJ25073.1 EDIAP_KXJ25073.1 30 17 44.1 392 0.000882613 Trace amine-associated receptor 7d [Exaiptasia diaphana]
KXJ16139.1 EDIAP_KXJ16139.1 21 17 29.1 554 0.000882613 Cytosolic carboxypeptidase 1 [Exaiptasia diaphana]
KXJ26570.1 EDIAP_KXJ26570.1 32 16 7.5 1944 0.000882613 [Protein ADP-ribosylarginine] hydrolase [Exaiptasia diaphana]
KXJ15233.1 EDIAP_KXJ15233.1 29 16 27.6 424 0.000882613 hypothetical protein AC249_AIPGENE838 [Exaiptasia diaphana]
KXJ15109.1 EDIAP_KXJ15109.1 23 16 12.9 1708 0.000882613 Major facilitator superfamily domain-containing protein 6 [Exaiptasia diaphana]
KXJ17104.1 EDIAP_KXJ17104.1 33 15 79.3 150 0.000882613 Proteasome assembly chaperone 1 [Exaiptasia diaphana]
KXJ20935.1 EDIAP_KXJ20935.1 25 14 26.1 713 0.000882613 Coagulation factor VIII [Exaiptasia diaphana]
KXJ07220.1 EDIAP_KXJ07220.1 22 14 30.9 434 0.000882613 Metallophosphoesterase 1 [Exaiptasia diaphana]
KXJ12417.1 EDIAP_KXJ12417.1 20 14 26.2 512 0.000882613 Cartilage matrix protein [Exaiptasia diaphana]
KXJ28231.1 EDIAP_KXJ28231.1 16 14 28.7 649 0.000882613 Cyclic nucleotide-binding domain-containing protein 2 [Exaiptasia diaphana]
KXJ24969.1 EDIAP_KXJ24969.1 22 13 25.6 367 0.000882613 Protein ovo, partial [Exaiptasia diaphana]
KXJ22191.1 EDIAP_KXJ22191.1 18 13 58 174 0.000882613 Hemicentin-1 [Exaiptasia diaphana]
KXJ17072.1 EDIAP_KXJ17072.1 18 12 61 195 0.000882613 Transgelin [Exaiptasia diaphana]
KXJ17205.1 EDIAP_KXJ17205.1 18 12 46.8 333 0.000882613 hypothetical protein AC249_AIPGENE12330, partial [Exaiptasia diaphana]
KXJ15999.1 EDIAP_KXJ15999.1 14 12 46 341 0.000882613 Eukaryotic translation initiation factor 4E transporter [Exaiptasia diaphana]
KXJ16990.1 EDIAP_KXJ16990.1 22 11 30.8 556 0.000882613 Transmembrane matrix receptor MUP-4 [Exaiptasia diaphana]
KXJ20473.1 EDIAP_KXJ20473.1 20 11 30.2 450 0.000882613 Small RNA degrading nuclease 5 [Exaiptasia diaphana]
Total protein records: 559  (+5 contaminants hidden)
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