Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD018851

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts (cysts)
PRIDE accessionPXD018851
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1386
Peptides (q≤0.01)4672
PSMs (q≤0.01)6643
reprocessed against the CnidoSite reference proteome
30 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
EVM0007958.1 MHONG_EVM0007958.1 198 63 38.5 1507 0.000289436 gene=EVM0007958
EVM0013745.1 MHONG_EVM0013745.1 57 44 30 1575 0.000289436 gene=EVM0013745
KII74575.1 TKITA_KII74575.1 36 33 21.7 1592 0.000289436 hypothetical protein RF11_16185 [Thelohanellus kitauei]
EVM0008257.1 MHONG_EVM0008257.1 49 31 22.1 1820 0.000289436 gene=EVM0008257
KII71942.1 TKITA_KII71942.1 31 25 25 1089 0.000289436 GTP-binding protein 1 [Thelohanellus kitauei]
EVM0003529.1 MHONG_EVM0003529.1 33 24 65.4 488 0.000289436 gene=EVM0003529
EVM0011333.1 MHONG_EVM0011333.1 47 23 39.6 697 0.000289436 gene=EVM0011333
KII73242.1 TKITA_KII73242.1 117 22 35.2 517 0.000289436 Serum response factor [Thelohanellus kitauei]
KII64277.1 TKITA_KII64277.1 32 22 21.1 1141 0.000289436 hypothetical protein RF11_10945 [Thelohanellus kitauei]
EVM0014152.1 MHONG_EVM0014152.1 59 21 60.6 391 0.000289436 gene=EVM0014152
KII73715.1 TKITA_KII73715.1 32 20 41.7 636 0.000289436 hypothetical protein RF11_11013 [Thelohanellus kitauei]
EVM0001225.1 MHONG_EVM0001225.1 26 20 57.6 368 0.000289436 gene=EVM0001225
EVM0011848.1 MHONG_EVM0011848.1 23 20 13.6 1692 0.000289436 gene=EVM0011848
EVM0012092.1 MHONG_EVM0012092.1 23 19 22.8 1021 0.000289436 gene=EVM0012092
EVM0002233.1 MHONG_EVM0002233.1 19 18 40.9 367 0.000289436 gene=EVM0002233
EVM0002878.1 MHONG_EVM0002878.1 36 17 19 789 0.000289436 gene=EVM0002878
EVM0001418.1 MHONG_EVM0001418.1 31 17 36.1 385 0.000289436 gene=EVM0001418
KII64171.1 TKITA_KII64171.1 22 17 46.2 435 0.000289436 hypothetical protein RF11_03226 [Thelohanellus kitauei]
EVM0006432.1 MHONG_EVM0006432.1 18 17 27.9 592 0.000289436 gene=EVM0006432
EVM0000416.1 MHONG_EVM0000416.1 46 16 18.4 828 0.000289436 gene=EVM0000416
KII60349.1 TKITA_KII60349.1 35 16 36.3 491 0.000289436 hypothetical protein RF11_04809 [Thelohanellus kitauei]
EVM0001034.1 MHONG_EVM0001034.1 29 16 16.5 1128 0.000289436 gene=EVM0001034
EVM0012429.1 MHONG_EVM0012429.1 29 16 36.9 458 0.000289436 gene=EVM0012429
EVM0005620.1 MHONG_EVM0005620.1 24 16 33.3 498 0.000289436 gene=EVM0005620
EVM0011159.1 MHONG_EVM0011159.1 18 16 12.8 1337 0.000289436 gene=EVM0011159
Total protein records: 1386  (+30 contaminants hidden)
Show: proteins per page
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