« All proteomic datasets | Browse the 298 identified proteins »
| Parameter | As reported by the original study | As applied by CnidoSite |
|---|---|---|
| Search engine | not stated in the deposit | Comet 2026.01 + Percolator (Crux 4.2) |
| Sequence database | not stated in the deposit | – CnidoSite reference proteome (2.anno), BUSCO-validated |
| Enzyme | – (not restated) | trypsin (fully enzymatic, 2 termini) · up to 2 missed cleavages |
| Precursor tolerance | not stated | 10 ppm |
| Fragment tolerance | not stated | 0.02 Da |
| Fixed modification | – | C+57.021464 (carbamidomethyl cysteine) |
| Variable modification | – | M+15.9949 (methionine oxidation) |
| Decoy strategy | – | Comet internal reversed (1:1) |
| False discovery rate | not stated | q ≤ 0.01 at the PSM level (Percolator q-values, target-decoy); protein level q ≤ 0.01 |
| Quantification | – | spectral counting (PSMs) |
| Contaminants | – | cRAP appended and flagged; 20 contaminant proteins identified and excluded from the reported protein list |
| Gene mapping | – | Peptides mapped to CnidoSite gene models; each protein links to its gene page |
| PSMs at q≤0.01 | Peptides at q≤0.01 | Gene-linked proteins | Contaminants (excluded) |
|---|---|---|---|
| 14,764 | 878 | 298 | 20 |
Pipeline version cnidosite-proteomics 1.0 · CnidoSite release 1.1 · incorporated 2026-09-20
Every stage is a single command; the parameter file written by stage 2 is the one shown in the table above.
| Gene | Protein | Unique peptides | PSMs | Coverage (%) | Length | Best q | Description |
|---|---|---|---|---|---|---|---|
| KXJ11485.1 | EDIAP_KXJ11485.1 | 31 | 1076 | 52.8 | 447 | 0.00148368 | Phosphatidate cytidylyltransferase, mitochondrial [Exaiptasia diaphana] |
| KXJ11682.1 | EDIAP_KXJ11682.1 | 29 | 1304 | 41.5 | 376 | 0.00148368 | Beta-glucuronidase [Exaiptasia diaphana] |
| KXJ10478.1 | EDIAP_KXJ10478.1 | 23 | 1113 | 50.7 | 134 | 0.00148368 | hypothetical protein AC249_AIPGENE9907 [Exaiptasia diaphana] |
| KXJ20864.1 | EDIAP_KXJ20864.1 | 18 | 148 | 19.4 | 803 | 0.00148368 | Lipid phosphate phosphohydrolase 3 [Exaiptasia diaphana] |
| KXJ16139.1 | EDIAP_KXJ16139.1 | 12 | 266 | 19.7 | 554 | 0.00148368 | Cytosolic carboxypeptidase 1 [Exaiptasia diaphana] |
| KXJ21663.1 | EDIAP_KXJ21663.1 | 11 | 586 | 25.3 | 376 | 0.00148368 | Protein arginine N-methyltransferase 3 [Exaiptasia diaphana] |
| KXJ16990.1 | EDIAP_KXJ16990.1 | 11 | 341 | 25.9 | 556 | 0.00148368 | Transmembrane matrix receptor MUP-4 [Exaiptasia diaphana] |
| KXJ10758.1 | EDIAP_KXJ10758.1 | 10 | 216 | 22.6 | 288 | 0.00148368 | Coiled-coil domain-containing protein 34 [Exaiptasia diaphana] |
| KXJ08383.1 | EDIAP_KXJ08383.1 | 9 | 309 | 38.5 | 340 | 0.00148368 | Uncharacterized protein K02A2.6 [Exaiptasia diaphana] |
| KXJ20389.1 | EDIAP_KXJ20389.1 | 9 | 144 | 10.3 | 857 | 0.00148368 | Sodium-coupled monocarboxylate transporter 1 [Exaiptasia diaphana] |
| KXJ10548.1 | EDIAP_KXJ10548.1 | 9 | 80 | 47.2 | 218 | 0.00148368 | Acylamino-acid-releasing enzyme [Exaiptasia diaphana] |
| KXJ04510.1 | EDIAP_KXJ04510.1 | 8 | 349 | 32.8 | 131 | 0.00148368 | hypothetical protein AC249_AIPGENE5933, partial [Exaiptasia diaphana] |
| KXJ08381.1 | EDIAP_KXJ08381.1 | 8 | 156 | 31.6 | 206 | 0.00148368 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial [Exaiptasia diaphana] |
| KXJ29013.1 | EDIAP_KXJ29013.1 | 8 | 72 | 4.9 | 1674 | 0.00148368 | Serine/threonine-protein kinase SIK3 [Exaiptasia diaphana] |
| KXJ29853.1 | EDIAP_KXJ29853.1 | 7 | 144 | 8.1 | 726 | 0.00148368 | MAGUK p55 subfamily member 5 [Exaiptasia diaphana] |
