Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD009253

SpeciesExaiptasia pallida
TissueIndividuals (symbiosis)
PRIDE accessionPXD009253
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins559
Peptides (q≤0.01)1673
PSMs (q≤0.01)2523
reprocessed against the CnidoSite reference proteome
5 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ18545.1 EDIAP_KXJ18545.1 2 1 5.2 268 0.000882613 Golgi-associated plant pathogenesis-related protein 1 [Exaiptasia diaphana]
KXJ19606.1 EDIAP_KXJ19606.1 2 1 4.4 298 0.000882613 Leucine-zipper-like transcriptional regulator 1 [Exaiptasia diaphana]
KXJ19669.1 EDIAP_KXJ19669.1 2 1 11.6 147 0.00150263 Casein kinase II subunit beta [Exaiptasia diaphana]
KXJ19974.1 EDIAP_KXJ19974.1 2 1 10.3 146 0.000882613 putative uncharacterized transposon-derived protein F54H12.3 [Exaiptasia diaphana]
KXJ20087.1 EDIAP_KXJ20087.1 2 1 5.5 293 0.000882613 hypothetical protein AC249_AIPGENE17950 [Exaiptasia diaphana]
KXJ20305.1 EDIAP_KXJ20305.1 2 1 1.9 515 0.000882613 Gamma-glutamyltranspeptidase 1 [Exaiptasia diaphana]
KXJ20602.1 EDIAP_KXJ20602.1 2 1 4.4 251 0.00150263 hypothetical protein AC249_AIPGENE9416 [Exaiptasia diaphana]
KXJ21809.1 EDIAP_KXJ21809.1 2 1 6.5 155 0.00224215 THAP domain-containing protein 10 [Exaiptasia diaphana]
KXJ22228.1 EDIAP_KXJ22228.1 2 1 3.9 310 0.000882613 Heat shock 70 kDa protein 13 [Exaiptasia diaphana]
KXJ22429.1 EDIAP_KXJ22429.1 2 1 3.3 389 0.000882613 Protein YIPF5 [Exaiptasia diaphana]
KXJ23288.1 EDIAP_KXJ23288.1 2 1 1.9 824 0.000882613 Receptor-type tyrosine-protein phosphatase delta [Exaiptasia diaphana]
KXJ24048.1 EDIAP_KXJ24048.1 2 1 10 221 0.000882613 Epidermal growth factor receptor substrate 15 [Exaiptasia diaphana]
KXJ24814.1 EDIAP_KXJ24814.1 2 1 3.3 419 0.000882613 Steryl-sulfatase [Exaiptasia diaphana]
KXJ25386.1 EDIAP_KXJ25386.1 2 1 6 369 0.000882613 hypothetical protein AC249_AIPGENE6894 [Exaiptasia diaphana]
KXJ25542.1 EDIAP_KXJ25542.1 2 1 2.3 573 0.000882613 Sulfotransferase 1C2 [Exaiptasia diaphana]
KXJ25698.1 EDIAP_KXJ25698.1 2 1 1.2 937 0.000882613 Dynein heavy chain 6, axonemal [Exaiptasia diaphana]
KXJ25761.1 EDIAP_KXJ25761.1 2 1 2.5 676 0.000882613 Prolyl-tRNA synthetase associated domain-containing protein 1 [Exaiptasia diaphana]
KXJ25864.1 EDIAP_KXJ25864.1 2 1 4.1 486 0.000882613 hypothetical protein AC249_AIPGENE27601 [Exaiptasia diaphana]
KXJ25876.1 EDIAP_KXJ25876.1 2 1 8.9 135 0.00354359 Iduronate 2-sulfatase [Exaiptasia diaphana]
KXJ25881.1 EDIAP_KXJ25881.1 2 1 4 430 0.000882613 Amidophosphoribosyltransferase [Exaiptasia diaphana]
KXJ26346.1 EDIAP_KXJ26346.1 2 1 3.1 320 0.00150263 hypothetical protein AC249_AIPGENE11611 [Exaiptasia diaphana]
KXJ26544.1 EDIAP_KXJ26544.1 2 1 1.4 1181 0.000882613 E3 ubiquitin-protein ligase RBBP6 [Exaiptasia diaphana]
KXJ28430.1 EDIAP_KXJ28430.1 2 1 4.4 479 0.000882613 hypothetical protein AC249_AIPGENE23264 [Exaiptasia diaphana]
KXJ28517.1 EDIAP_KXJ28517.1 2 1 2.1 480 0.000882613 Acetyl-coenzyme A synthetase [Exaiptasia diaphana]
KXJ28902.1 EDIAP_KXJ28902.1 2 1 2.7 488 0.000882613 Protein FAM81A [Exaiptasia diaphana]
Total protein records: 559  (+5 contaminants hidden)
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