Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD009253

SpeciesExaiptasia pallida
TissueIndividuals (symbiosis)
PRIDE accessionPXD009253
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins559
Peptides (q≤0.01)1673
PSMs (q≤0.01)2523
reprocessed against the CnidoSite reference proteome
5 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ11802.1 EDIAP_KXJ11802.1 1 1 5 181 0.00626959 ATP-dependent RNA helicase DDX51 [Exaiptasia diaphana]
KXJ12025.1 EDIAP_KXJ12025.1 1 1 11 146 0.000882613 CAP-Gly domain-containing linker protein 3 [Exaiptasia diaphana]
KXJ12165.1 EDIAP_KXJ12165.1 1 1 1.1 892 0.00686642 hypothetical protein AC249_AIPGENE9771 [Exaiptasia diaphana]
KXJ12185.1 EDIAP_KXJ12185.1 1 1 4 428 0.000882613 Glutathione peroxidase 1 [Exaiptasia diaphana]
KXJ12256.1 EDIAP_KXJ12256.1 1 1 3.1 321 0.000882613 Gamma-aminobutyric acid type B receptor subunit 1 [Exaiptasia diaphana]
KXJ12268.1 EDIAP_KXJ12268.1 1 1 0.4 3918 0.00896593 putative G-protein coupled receptor 157 [Exaiptasia diaphana]
KXJ12531.1 EDIAP_KXJ12531.1 1 1 6.4 236 0.00150263 Pro-Pol polyprotein [Exaiptasia diaphana]
KXJ12565.1 EDIAP_KXJ12565.1 1 1 3.7 625 0.000882613 hypothetical protein AC249_AIPGENE14582 [Exaiptasia diaphana]
KXJ12623.1 EDIAP_KXJ12623.1 1 1 5.1 277 0.000882613 Telomerase protein component 1 [Exaiptasia diaphana]
KXJ12642.1 EDIAP_KXJ12642.1 1 1 13.9 194 0.000882613 Protein FAM188A [Exaiptasia diaphana]
KXJ12975.1 EDIAP_KXJ12975.1 1 1 1.5 949 0.000882613 hypothetical protein AC249_AIPGENE22051 [Exaiptasia diaphana]
KXJ13122.1 EDIAP_KXJ13122.1 1 1 4.6 326 0.00896593 Phosphatidylinositol-binding clathrin assembly protein [Exaiptasia diaphana]
KXJ13254.1 EDIAP_KXJ13254.1 1 1 6.6 241 0.000882613 hypothetical protein AC249_AIPGENE23865 [Exaiptasia diaphana]
KXJ13262.1 EDIAP_KXJ13262.1 1 1 4.6 284 0.00581771 Nematocyte expressed protein 6 [Exaiptasia diaphana]
KXJ13271.1 EDIAP_KXJ13271.1 1 1 3.8 289 0.00686642 Nematocyte expressed protein 6 [Exaiptasia diaphana]
KXJ13479.1 EDIAP_KXJ13479.1 1 1 10.7 112 0.000882613 ADP-ribosylation factor 4 [Exaiptasia diaphana]
KXJ13492.1 EDIAP_KXJ13492.1 1 1 6.8 251 0.000882613 Dynein heavy chain 6, axonemal [Exaiptasia diaphana]
KXJ13739.1 EDIAP_KXJ13739.1 1 1 1.3 673 0.00626959 hypothetical protein AC249_AIPGENE5313 [Exaiptasia diaphana]
KXJ13756.1 EDIAP_KXJ13756.1 1 1 4.8 335 0.00581771 hypothetical protein AC249_AIPGENE5330 [Exaiptasia diaphana]
KXJ13871.1 EDIAP_KXJ13871.1 1 1 4.2 284 0.000882613 N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 [Exaiptasia diaphana]
KXJ14046.1 EDIAP_KXJ14046.1 1 1 1.3 1069 0.00853138 Protein jagunal-like 1 [Exaiptasia diaphana]
KXJ14068.1 EDIAP_KXJ14068.1 1 1 7.4 229 0.000882613 15-hydroxyprostaglandin dehydrogenase [NAD(+)] [Exaiptasia diaphana]
KXJ14098.1 EDIAP_KXJ14098.1 1 1 3.5 434 0.000882613 hypothetical protein AC249_AIPGENE25215 [Exaiptasia diaphana]
KXJ14294.1 EDIAP_KXJ14294.1 1 1 7.9 151 0.000882613 hypothetical protein AC249_AIPGENE5973 [Exaiptasia diaphana]
KXJ14390.1 EDIAP_KXJ14390.1 1 1 3.4 443 0.000882613 Pyrroline-5-carboxylate reductase 3 [Exaiptasia diaphana]
Total protein records: 559  (+5 contaminants hidden)
Show: proteins per page
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