Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD009253

SpeciesExaiptasia pallida
TissueIndividuals (symbiosis)
PRIDE accessionPXD009253
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins559
Peptides (q≤0.01)1673
PSMs (q≤0.01)2523
reprocessed against the CnidoSite reference proteome
5 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ16363.1 EDIAP_KXJ16363.1 1 1 4.9 426 0.00354359 Calcium-responsive transcription coactivator [Exaiptasia diaphana]
KXJ16512.1 EDIAP_KXJ16512.1 1 1 7.5 254 0.00150263 Transposon Ty3-G Gag-Pol polyprotein [Exaiptasia diaphana]
KXJ16563.1 EDIAP_KXJ16563.1 1 1 8 137 0.00150263 GPALPP motifs-containing protein 1 [Exaiptasia diaphana]
KXJ16608.1 EDIAP_KXJ16608.1 1 1 8.4 287 0.000882613 Ras guanine nucleotide exchange factor J [Exaiptasia diaphana]
KXJ16693.1 EDIAP_KXJ16693.1 1 1 2.6 389 0.000882613 hypothetical protein AC249_AIPGENE16176 [Exaiptasia diaphana]
KXJ16721.1 EDIAP_KXJ16721.1 1 1 3.4 382 0.00150263 Coagulation factor VIII [Exaiptasia diaphana]
KXJ16772.1 EDIAP_KXJ16772.1 1 1 11.8 161 0.000882613 Transcriptional repressor NF-X1, partial [Exaiptasia diaphana]
KXJ16896.1 EDIAP_KXJ16896.1 1 1 3.4 414 0.000882613 Chromatin target of PRMT1 protein [Exaiptasia diaphana]
KXJ16978.1 EDIAP_KXJ16978.1 1 1 6.7 163 0.00626959 Glutathione gamma-glutamylcysteinyltransferase [Exaiptasia diaphana]
KXJ16992.1 EDIAP_KXJ16992.1 1 1 1.7 418 0.000882613 Protein transport protein Sec61 subunit beta [Exaiptasia diaphana]
KXJ17025.1 EDIAP_KXJ17025.1 1 1 3.9 435 0.000882613 MRG/MORF4L-binding protein [Exaiptasia diaphana]
KXJ17162.1 EDIAP_KXJ17162.1 1 1 4.3 440 0.000882613 hypothetical protein AC249_AIPGENE16220 [Exaiptasia diaphana]
KXJ17282.1 EDIAP_KXJ17282.1 1 1 2.4 455 0.000882613 Leucine-rich repeat-containing protein 74A [Exaiptasia diaphana]
KXJ17556.1 EDIAP_KXJ17556.1 1 1 4.5 287 0.00293255 DDB1- and CUL4-associated factor 15 [Exaiptasia diaphana]
KXJ17734.1 EDIAP_KXJ17734.1 1 1 4.1 267 0.000882613 Nuclear pore complex protein Nup133 [Exaiptasia diaphana]
KXJ17976.1 EDIAP_KXJ17976.1 1 1 2.4 499 0.000882613 S-antigen protein [Exaiptasia diaphana]
KXJ18171.1 EDIAP_KXJ18171.1 1 1 6 150 0.000882613 Rhomboid-like protein 15 [Exaiptasia diaphana]
KXJ18432.1 EDIAP_KXJ18432.1 1 1 7.9 139 0.000882613 M-phase phosphoprotein 6 [Exaiptasia diaphana]
KXJ18478.1 EDIAP_KXJ18478.1 1 1 11.4 114 0.000882613 RNA pseudouridylate synthase domain-containing protein 2 [Exaiptasia diaphana]
KXJ18595.1 EDIAP_KXJ18595.1 1 1 3.8 372 0.00626959 hypothetical protein AC249_AIPGENE8964 [Exaiptasia diaphana]
KXJ18610.1 EDIAP_KXJ18610.1 1 1 6.2 224 0.000882613 Phytanoyl-CoA dioxygenase domain-containing protein 1 [Exaiptasia diaphana]
KXJ18675.1 EDIAP_KXJ18675.1 1 1 3.4 696 0.004811 hypothetical protein AC249_AIPGENE25526 [Exaiptasia diaphana]
KXJ18713.1 EDIAP_KXJ18713.1 1 1 1.1 725 0.00581771 hypothetical protein AC249_AIPGENE25545 [Exaiptasia diaphana]
KXJ18756.1 EDIAP_KXJ18756.1 1 1 2.1 889 0.000882613 E3 ubiquitin-protein ligase HECTD1 [Exaiptasia diaphana]
KXJ18794.1 EDIAP_KXJ18794.1 1 1 4.2 312 0.000882613 Protein ripply [Exaiptasia diaphana]
Total protein records: 559  (+5 contaminants hidden)
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