Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD009253

SpeciesExaiptasia pallida
TissueIndividuals (symbiosis)
PRIDE accessionPXD009253
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins559
Peptides (q≤0.01)1673
PSMs (q≤0.01)2523
reprocessed against the CnidoSite reference proteome
5 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ19134.1 EDIAP_KXJ19134.1 1 1 4.6 303 0.00293255 4-coumarate--CoA ligase [Exaiptasia diaphana]
KXJ19267.1 EDIAP_KXJ19267.1 1 1 8.1 210 0.004811 Discoidin domain-containing receptor 2 [Exaiptasia diaphana]
KXJ19435.1 EDIAP_KXJ19435.1 1 1 8 150 0.000882613 hypothetical protein AC249_AIPGENE12468 [Exaiptasia diaphana]
KXJ19826.1 EDIAP_KXJ19826.1 1 1 2.3 443 0.000882613 Serine/threonine-protein kinase mTOR [Exaiptasia diaphana]
KXJ19926.1 EDIAP_KXJ19926.1 1 1 2.3 555 0.00626959 BTB/POZ domain-containing protein 2 [Exaiptasia diaphana]
KXJ20009.1 EDIAP_KXJ20009.1 1 1 11.3 97 0.00150263 Phospholipase DDHD1 [Exaiptasia diaphana]
KXJ20298.1 EDIAP_KXJ20298.1 1 1 2.7 679 0.000882613 Protein mab-21-like 3 [Exaiptasia diaphana]
KXJ20451.1 EDIAP_KXJ20451.1 1 1 0.3 6730 0.00354359 Zinc finger protein 598 [Exaiptasia diaphana]
KXJ20490.1 EDIAP_KXJ20490.1 1 1 3.4 417 0.00743955 Forkhead box protein J1 [Exaiptasia diaphana]
KXJ20540.1 EDIAP_KXJ20540.1 1 1 4.8 454 0.00581771 hypothetical protein AC249_AIPGENE7302 [Exaiptasia diaphana]
KXJ20794.1 EDIAP_KXJ20794.1 1 1 6.5 184 0.00581771 hypothetical protein AC249_AIPGENE396, partial [Exaiptasia diaphana]
KXJ20839.1 EDIAP_KXJ20839.1 1 1 4.3 372 0.000882613 putative glutamine amidotransferase [Exaiptasia diaphana]
KXJ20920.1 EDIAP_KXJ20920.1 1 1 2.8 494 0.000882613 MutS protein-like 4 [Exaiptasia diaphana]
KXJ21024.1 EDIAP_KXJ21024.1 1 1 1.7 866 0.000882613 hypothetical protein AC249_AIPGENE4390 [Exaiptasia diaphana]
KXJ21036.1 EDIAP_KXJ21036.1 1 1 3.4 358 0.000882613 hypothetical protein AC249_AIPGENE4354 [Exaiptasia diaphana]
KXJ21173.1 EDIAP_KXJ21173.1 1 1 17.9 84 0.000882613 TGF-beta receptor type-2 [Exaiptasia diaphana]
KXJ21178.1 EDIAP_KXJ21178.1 1 1 2.6 499 0.00150263 Zinc finger protein 808 [Exaiptasia diaphana]
KXJ21201.1 EDIAP_KXJ21201.1 1 1 4 425 0.00150263 Cytosolic beta-glucosidase [Exaiptasia diaphana]
KXJ21266.1 EDIAP_KXJ21266.1 1 1 1.3 1298 0.00896593 60S ribosome subunit biogenesis protein NIP7-like [Exaiptasia diaphana]
KXJ21290.1 EDIAP_KXJ21290.1 1 1 2.7 554 0.00150263 UBX domain-containing protein 6 [Exaiptasia diaphana]
KXJ21472.1 EDIAP_KXJ21472.1 1 1 2.2 540 0.000882613 hypothetical protein AC249_AIPGENE764 [Exaiptasia diaphana]
KXJ21663.1 EDIAP_KXJ21663.1 1 1 6.1 376 0.00150263 Protein arginine N-methyltransferase 3 [Exaiptasia diaphana]
KXJ21695.1 EDIAP_KXJ21695.1 1 1 8.1 172 0.00150263 Glutamine-rich protein 2 [Exaiptasia diaphana]
KXJ21733.1 EDIAP_KXJ21733.1 1 1 3.8 478 0.000882613 Peroxidasin-like [Exaiptasia diaphana]
KXJ21784.1 EDIAP_KXJ21784.1 1 1 5.7 229 0.000882613 GTPase-activating Rap/Ran-GAP domain-like protein 3 [Exaiptasia diaphana]
Total protein records: 559  (+5 contaminants hidden)
Show: proteins per page
TOP