Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD009253

SpeciesExaiptasia pallida
TissueIndividuals (symbiosis)
PRIDE accessionPXD009253
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins559
Peptides (q≤0.01)1673
PSMs (q≤0.01)2523
reprocessed against the CnidoSite reference proteome
5 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ26265.1 EDIAP_KXJ26265.1 19 11 44.1 320 0.000882613 Protein fem-1-like B [Exaiptasia diaphana]
KXJ19433.1 EDIAP_KXJ19433.1 20 10 15.7 676 0.000882613 hypothetical protein AC249_AIPGENE12481, partial [Exaiptasia diaphana]
KXJ23782.1 EDIAP_KXJ23782.1 14 10 26.3 365 0.000882613 GTP-binding protein ypt1 [Exaiptasia diaphana]
KXJ30222.1 EDIAP_KXJ30222.1 13 10 4.4 3185 0.000882613 Mannose-1-phosphate guanyltransferase beta-B [Exaiptasia diaphana]
KXJ06426.1 EDIAP_KXJ06426.1 16 9 32.8 262 0.000882613 hypothetical protein AC249_AIPGENE16109 [Exaiptasia diaphana]
KXJ11485.1 EDIAP_KXJ11485.1 14 9 20.8 447 0.000882613 Phosphatidate cytidylyltransferase, mitochondrial [Exaiptasia diaphana]
KXJ12441.1 EDIAP_KXJ12441.1 13 9 10.2 820 0.000882613 Tetratricopeptide repeat protein 28 [Exaiptasia diaphana]
KXJ29831.1 EDIAP_KXJ29831.1 12 9 46.3 231 0.000882613 Orexin receptor type 1 [Exaiptasia diaphana]
KXJ08874.1 EDIAP_KXJ08874.1 16 8 31.7 259 0.000882613 Protein dispatched-like 1 [Exaiptasia diaphana]
KXJ10548.1 EDIAP_KXJ10548.1 14 8 37.6 218 0.000882613 Acylamino-acid-releasing enzyme [Exaiptasia diaphana]
KXJ23906.1 EDIAP_KXJ23906.1 14 8 20.5 375 0.000882613 hypothetical protein AC249_AIPGENE168 [Exaiptasia diaphana]
KXJ25787.1 EDIAP_KXJ25787.1 14 8 27.7 332 0.000882613 putative E3 ubiquitin-protein ligase HERC3, partial [Exaiptasia diaphana]
KXJ26464.1 EDIAP_KXJ26464.1 14 8 32.8 348 0.000882613 Carbonic anhydrase 7 [Exaiptasia diaphana]
KXJ05483.1 EDIAP_KXJ05483.1 13 8 20.3 369 0.000882613 hypothetical protein AC249_AIPGENE570, partial [Exaiptasia diaphana]
KXJ27909.1 EDIAP_KXJ27909.1 13 8 31.7 360 0.000882613 putative transferase CAF17-like, mitochondrial [Exaiptasia diaphana]
KXJ25306.1 EDIAP_KXJ25306.1 12 8 22.2 436 0.000882613 hypothetical protein AC249_AIPGENE10656 [Exaiptasia diaphana]
KXJ18874.1 EDIAP_KXJ18874.1 11 8 16.1 620 0.000882613 hypothetical protein AC249_AIPGENE20152 [Exaiptasia diaphana]
KXJ20005.1 EDIAP_KXJ20005.1 11 8 18.9 586 0.000882613 hypothetical protein AC249_AIPGENE15303 [Exaiptasia diaphana]
KXJ26919.1 EDIAP_KXJ26919.1 11 8 17.6 312 0.000882613 putative G-protein coupled receptor 158 [Exaiptasia diaphana]
KXJ15252.1 EDIAP_KXJ15252.1 10 8 26.1 502 0.000882613 Major facilitator superfamily domain-containing protein 6 [Exaiptasia diaphana]
KXJ27913.1 EDIAP_KXJ27913.1 15 7 62.6 147 0.000882613 hypothetical protein AC249_AIPGENE2912 [Exaiptasia diaphana]
KXJ27726.1 EDIAP_KXJ27726.1 13 7 26.9 334 0.000882613 Protein ZGRF1 [Exaiptasia diaphana]
KXJ14422.1 EDIAP_KXJ14422.1 12 7 27.7 267 0.000882613 T-complex protein 1 subunit eta [Exaiptasia diaphana]
KXJ12239.1 EDIAP_KXJ12239.1 11 7 10.6 800 0.000882613 hypothetical protein AC249_AIPGENE5668 [Exaiptasia diaphana]
KXJ20380.1 EDIAP_KXJ20380.1 10 7 49.5 95 0.000882613 hypothetical protein AC249_AIPGENE25118 [Exaiptasia diaphana]
Total protein records: 559  (+5 contaminants hidden)
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