Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD009253

SpeciesExaiptasia pallida
TissueIndividuals (symbiosis)
PRIDE accessionPXD009253
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins559
Peptides (q≤0.01)1673
PSMs (q≤0.01)2523
reprocessed against the CnidoSite reference proteome
5 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ21846.1 EDIAP_KXJ21846.1 1 1 3 398 0.000882613 Low density lipoprotein receptor adapter protein 1 [Exaiptasia diaphana]
KXJ21848.1 EDIAP_KXJ21848.1 1 1 5.8 223 0.000882613 hypothetical protein AC249_AIPGENE12172 [Exaiptasia diaphana]
KXJ22209.1 EDIAP_KXJ22209.1 1 1 4.4 406 0.000882613 Calmodulin [Exaiptasia diaphana]
KXJ22602.1 EDIAP_KXJ22602.1 1 1 1.5 1103 0.000882613 Multiple C2 and transmembrane domain-containing protein 1 [Exaiptasia diaphana]
KXJ22701.1 EDIAP_KXJ22701.1 1 1 12.3 130 0.00150263 Pro-Pol polyprotein [Exaiptasia diaphana]
KXJ22764.1 EDIAP_KXJ22764.1 1 1 1 1264 0.00896593 Hydroxylysine kinase [Exaiptasia diaphana]
KXJ22777.1 EDIAP_KXJ22777.1 1 1 0.9 1721 0.00626959 hypothetical protein AC249_AIPGENE26043 [Exaiptasia diaphana]
KXJ22788.1 EDIAP_KXJ22788.1 1 1 2.7 634 0.00686642 Krueppel-like factor 5 [Exaiptasia diaphana]
KXJ22839.1 EDIAP_KXJ22839.1 1 1 4.3 326 0.000882613 G patch domain and ankyrin repeat-containing protein 1 [Exaiptasia diaphana]
KXJ23168.1 EDIAP_KXJ23168.1 1 1 3 631 0.00626959 hypothetical protein AC249_AIPGENE10549 [Exaiptasia diaphana]
KXJ23233.1 EDIAP_KXJ23233.1 1 1 16.1 137 0.000882613 Importin-7 [Exaiptasia diaphana]
KXJ23301.1 EDIAP_KXJ23301.1 1 1 3.1 574 0.00354359 Solute carrier family 2, facilitated glucose transporter member 8 [Exaiptasia diaphana]
KXJ23313.1 EDIAP_KXJ23313.1 1 1 3.4 354 0.000882613 hypothetical protein AC249_AIPGENE6214 [Exaiptasia diaphana]
KXJ23320.1 EDIAP_KXJ23320.1 1 1 3.6 308 0.000882613 hypothetical protein AC249_AIPGENE6188 [Exaiptasia diaphana]
KXJ23322.1 EDIAP_KXJ23322.1 1 1 2.7 669 0.000882613 Protein canopy 4 [Exaiptasia diaphana]
KXJ23339.1 EDIAP_KXJ23339.1 1 1 3.4 439 0.000882613 hypothetical protein AC249_AIPGENE6177 [Exaiptasia diaphana]
KXJ23426.1 EDIAP_KXJ23426.1 1 1 0.5 1313 0.00853138 hypothetical protein AC249_AIPGENE24713 [Exaiptasia diaphana]
KXJ23504.1 EDIAP_KXJ23504.1 1 1 4.3 324 0.000882613 hypothetical protein AC249_AIPGENE7181 [Exaiptasia diaphana]
KXJ23553.1 EDIAP_KXJ23553.1 1 1 10.1 149 0.00354359 hypothetical protein AC249_AIPGENE12381 [Exaiptasia diaphana]
KXJ23680.1 EDIAP_KXJ23680.1 1 1 5.9 202 0.00354359 E3 ubiquitin-protein ligase TRIM71 [Exaiptasia diaphana]
KXJ23692.1 EDIAP_KXJ23692.1 1 1 3.6 417 0.000882613 Sex comb on midleg-like protein 2 [Exaiptasia diaphana]
KXJ23780.1 EDIAP_KXJ23780.1 1 1 15.4 78 0.000882613 NHL repeat-containing protein 2 [Exaiptasia diaphana]
KXJ24143.1 EDIAP_KXJ24143.1 1 1 10.3 145 0.00626959 Prickle-like protein 3 [Exaiptasia diaphana]
KXJ24145.1 EDIAP_KXJ24145.1 1 1 1.8 513 0.00853138 hypothetical protein AC249_AIPGENE16669 [Exaiptasia diaphana]
KXJ24290.1 EDIAP_KXJ24290.1 1 1 4.5 246 0.00421644 AN1-type zinc finger protein 1 [Exaiptasia diaphana]
Total protein records: 559  (+5 contaminants hidden)
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