Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD009253

SpeciesExaiptasia pallida
TissueIndividuals (symbiosis)
PRIDE accessionPXD009253
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins559
Peptides (q≤0.01)1673
PSMs (q≤0.01)2523
reprocessed against the CnidoSite reference proteome
5 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ24344.1 EDIAP_KXJ24344.1 1 1 6.3 269 0.00150263 Short-chain collagen C4 [Exaiptasia diaphana]
KXJ24370.1 EDIAP_KXJ24370.1 1 1 5.4 166 0.004811 hypothetical protein AC249_AIPGENE22700 [Exaiptasia diaphana]
KXJ24411.1 EDIAP_KXJ24411.1 1 1 6.4 236 0.000882613 Actin-depolymerizing factor 1, isoforms a/b [Exaiptasia diaphana]
KXJ24414.1 EDIAP_KXJ24414.1 1 1 1.7 716 0.00581771 Radial spoke head protein 3-like [Exaiptasia diaphana]
KXJ24620.1 EDIAP_KXJ24620.1 1 1 0.9 1442 0.00150263 hypothetical protein AC249_AIPGENE24756 [Exaiptasia diaphana]
KXJ24694.1 EDIAP_KXJ24694.1 1 1 1.6 550 0.000882613 Apoptogenic protein 1, mitochondrial [Exaiptasia diaphana]
KXJ24967.1 EDIAP_KXJ24967.1 1 1 5.7 210 0.00150263 Conserved oligomeric Golgi complex subunit 8 [Exaiptasia diaphana]
KXJ25150.1 EDIAP_KXJ25150.1 1 1 2.8 506 0.00539811 5-hydroxytryptamine receptor 1B [Exaiptasia diaphana]
KXJ25185.1 EDIAP_KXJ25185.1 1 1 7.2 152 0.00539811 Glypican-1 [Exaiptasia diaphana]
KXJ25285.1 EDIAP_KXJ25285.1 1 1 1.4 990 0.00896593 Dynein heavy chain 5, axonemal [Exaiptasia diaphana]
KXJ25587.1 EDIAP_KXJ25587.1 1 1 2.1 512 0.00853138 hypothetical protein AC249_AIPGENE6373 [Exaiptasia diaphana]
KXJ25927.1 EDIAP_KXJ25927.1 1 1 1.8 1131 0.000882613 hypothetical protein AC249_AIPGENE12968 [Exaiptasia diaphana]
KXJ25959.1 EDIAP_KXJ25959.1 1 1 2.2 408 0.000882613 G-protein coupled receptor 161 [Exaiptasia diaphana]
KXJ26277.1 EDIAP_KXJ26277.1 1 1 2.5 482 0.000882613 Protein eva-1-like C [Exaiptasia diaphana]
KXJ26433.1 EDIAP_KXJ26433.1 1 1 1.8 764 0.000882613 hypothetical protein AC249_AIPGENE11601 [Exaiptasia diaphana]
KXJ26451.1 EDIAP_KXJ26451.1 1 1 2.5 551 0.000882613 F-BAR and double SH3 domains protein 2 [Exaiptasia diaphana]
KXJ26640.1 EDIAP_KXJ26640.1 1 1 4.5 246 0.00150263 Mitotic spindle assembly checkpoint protein MAD1 [Exaiptasia diaphana]
KXJ26657.1 EDIAP_KXJ26657.1 1 1 4.7 508 0.00581771 Zinc finger ZZ-type and EF-hand domain-containing protein 1 [Exaiptasia diaphana]
KXJ26730.1 EDIAP_KXJ26730.1 1 1 3.6 702 0.00150263 hypothetical protein AC249_AIPGENE9223 [Exaiptasia diaphana]
KXJ26785.1 EDIAP_KXJ26785.1 1 1 1.6 960 0.000882613 putative gamma-glutamyltransferase YwrD [Exaiptasia diaphana]
KXJ26844.1 EDIAP_KXJ26844.1 1 1 4.5 243 0.00150263 Isochorismatase domain-containing protein 2, mitochondrial [Exaiptasia diaphana]
KXJ26883.1 EDIAP_KXJ26883.1 1 1 1.6 498 0.00539811 putative RNA-directed DNA polymerase from transposon X-element [Exaiptasia diaphana]
KXJ27081.1 EDIAP_KXJ27081.1 1 1 1 1092 0.000882613 hypothetical protein AC249_AIPGENE13750 [Exaiptasia diaphana]
KXJ27216.1 EDIAP_KXJ27216.1 1 1 1.5 781 0.00853138 hypothetical protein AC249_AIPGENE17640 [Exaiptasia diaphana]
KXJ27228.1 EDIAP_KXJ27228.1 1 1 3.6 249 0.00743955 hypothetical protein AC249_AIPGENE17546 [Exaiptasia diaphana]
Total protein records: 559  (+5 contaminants hidden)
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