Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD009253

SpeciesExaiptasia pallida
TissueIndividuals (symbiosis)
PRIDE accessionPXD009253
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins559
Peptides (q≤0.01)1673
PSMs (q≤0.01)2523
reprocessed against the CnidoSite reference proteome
5 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ29645.1 EDIAP_KXJ29645.1 1 1 12.4 129 0.000882613 hypothetical protein AC249_AIPGENE18535 [Exaiptasia diaphana]
KXJ29746.1 EDIAP_KXJ29746.1 1 1 3.7 875 0.00150263 Retrovirus-related Pol polyprotein from transposon 297 [Exaiptasia diaphana]
KXJ29828.1 EDIAP_KXJ29828.1 1 1 0.9 1166 0.000882613 Filamin-B [Exaiptasia diaphana]
KXJ29955.1 EDIAP_KXJ29955.1 1 1 1.4 1249 0.00853138 hypothetical protein AC249_AIPGENE3118 [Exaiptasia diaphana]
KXJ29978.1 EDIAP_KXJ29978.1 1 1 4.3 299 0.000882613 SAYSvFN domain-containing protein 1 [Exaiptasia diaphana]
KXJ30013.1 EDIAP_KXJ30013.1 1 1 3.6 390 0.00150263 Toxin PsTX-60A [Exaiptasia diaphana]
KXJ30019.1 EDIAP_KXJ30019.1 1 1 3.7 379 0.000882613 hypothetical protein AC249_AIPGENE3026 [Exaiptasia diaphana]
KXJ30102.1 EDIAP_KXJ30102.1 1 1 5.2 230 0.000882613 SRSF protein kinase 1 [Exaiptasia diaphana]
KXJ30119.1 EDIAP_KXJ30119.1 1 1 5.8 172 0.000882613 hypothetical protein AC249_AIPGENE13085 [Exaiptasia diaphana]
Total protein records: 559  (+5 contaminants hidden)
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