Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD009253

SpeciesExaiptasia pallida
TissueIndividuals (symbiosis)
PRIDE accessionPXD009253
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins559
Peptides (q≤0.01)1673
PSMs (q≤0.01)2523
reprocessed against the CnidoSite reference proteome
5 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ29366.1 EDIAP_KXJ29366.1 7 4 15.4 279 0.000882613 hypothetical protein AC249_AIPGENE27027 [Exaiptasia diaphana]
KXJ29488.1 EDIAP_KXJ29488.1 7 4 21.5 214 0.000882613 Protein NLRC5 [Exaiptasia diaphana]
KXJ08913.1 EDIAP_KXJ08913.1 6 4 19.8 207 0.000882613 hypothetical protein AC249_AIPGENE2980 [Exaiptasia diaphana]
KXJ09437.1 EDIAP_KXJ09437.1 6 4 4.2 1464 0.000882613 hypothetical protein AC249_AIPGENE16744 [Exaiptasia diaphana]
KXJ10494.1 EDIAP_KXJ10494.1 6 4 10.3 737 0.000882613 Histone deacetylase 2 [Exaiptasia diaphana]
KXJ11864.1 EDIAP_KXJ11864.1 6 4 17.5 331 0.000882613 hypothetical protein AC249_AIPGENE26159 [Exaiptasia diaphana]
KXJ11878.1 EDIAP_KXJ11878.1 6 4 4 930 0.000882613 GPN-loop GTPase 1 [Exaiptasia diaphana]
KXJ23647.1 EDIAP_KXJ23647.1 6 4 32.1 184 0.000882613 60S ribosomal protein L18 [Exaiptasia diaphana]
KXJ26833.1 EDIAP_KXJ26833.1 6 4 20.2 198 0.000882613 hypothetical protein AC249_AIPGENE26392 [Exaiptasia diaphana]
KXJ29853.1 EDIAP_KXJ29853.1 6 4 4.8 726 0.000882613 MAGUK p55 subfamily member 5 [Exaiptasia diaphana]
KXJ10402.1 EDIAP_KXJ10402.1 5 4 31.3 150 0.000882613 hypothetical protein AC249_AIPGENE23523 [Exaiptasia diaphana]
KXJ11139.1 EDIAP_KXJ11139.1 5 4 8.2 773 0.000882613 Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Exaiptasia diaphana]
KXJ15115.1 EDIAP_KXJ15115.1 5 4 7.7 778 0.000882613 WD repeat-containing protein 61 [Exaiptasia diaphana]
KXJ15279.1 EDIAP_KXJ15279.1 5 4 9.1 704 0.000882613 Major facilitator superfamily domain-containing protein 6 [Exaiptasia diaphana]
KXJ16174.1 EDIAP_KXJ16174.1 5 4 8.8 625 0.000882613 Proton-coupled folate transporter [Exaiptasia diaphana]
KXJ16555.1 EDIAP_KXJ16555.1 5 4 31.1 161 0.000882613 hypothetical protein AC249_AIPGENE27231 [Exaiptasia diaphana]
KXJ17155.1 EDIAP_KXJ17155.1 5 4 1.9 2115 0.00150263 Fibroblast growth factor receptor 3 [Exaiptasia diaphana]
KXJ29000.1 EDIAP_KXJ29000.1 5 4 15.6 320 0.000882613 Histone-lysine N-methyltransferase SETD1B-A [Exaiptasia diaphana]
KXJ08670.1 EDIAP_KXJ08670.1 4 4 13.1 367 0.000882613 hypothetical protein AC249_AIPGENE4960 [Exaiptasia diaphana]
KXJ24826.1 EDIAP_KXJ24826.1 4 4 9.8 325 0.000882613 Protein rolling stone [Exaiptasia diaphana]
KXJ07673.1 EDIAP_KXJ07673.1 10 3 43 79 0.000882613 Branched-chain-amino-acid aminotransferase [Exaiptasia diaphana]
KXJ15098.1 EDIAP_KXJ15098.1 9 3 7 328 0.000882613 Methionyl-tRNA formyltransferase, mitochondrial [Exaiptasia diaphana]
KXJ05705.1 EDIAP_KXJ05705.1 7 3 31.3 134 0.000882613 hypothetical protein AC249_AIPGENE24379, partial [Exaiptasia diaphana]
KXJ15312.1 EDIAP_KXJ15312.1 7 3 1.7 2353 0.000882613 Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [Exaiptasia diaphana]
KXJ11884.1 EDIAP_KXJ11884.1 6 3 23 213 0.000882613 IQ domain-containing protein D [Exaiptasia diaphana]
Total protein records: 559  (+5 contaminants hidden)
Show: proteins per page
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