Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD009253

SpeciesExaiptasia pallida
TissueIndividuals (symbiosis)
PRIDE accessionPXD009253
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins559
Peptides (q≤0.01)1673
PSMs (q≤0.01)2523
reprocessed against the CnidoSite reference proteome
5 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ12378.1 EDIAP_KXJ12378.1 6 3 12.8 234 0.000882613 14-3-3-like protein 2 [Exaiptasia diaphana]
KXJ27760.1 EDIAP_KXJ27760.1 6 3 15.1 212 0.000882613 hypothetical protein AC249_AIPGENE9044 [Exaiptasia diaphana]
KXJ29973.1 EDIAP_KXJ29973.1 6 3 4.8 665 0.00150263 Regulator of chromosome condensation [Exaiptasia diaphana]
KXJ08141.1 EDIAP_KXJ08141.1 5 3 17.4 288 0.000882613 hypothetical protein AC249_AIPGENE25343 [Exaiptasia diaphana]
KXJ08690.1 EDIAP_KXJ08690.1 5 3 11.8 322 0.000882613 hypothetical protein AC249_AIPGENE19766 [Exaiptasia diaphana]
KXJ12376.1 EDIAP_KXJ12376.1 5 3 10.4 193 0.000882613 Transposon Ty3-I Gag-Pol polyprotein [Exaiptasia diaphana]
KXJ12410.1 EDIAP_KXJ12410.1 5 3 15.6 244 0.000882613 Polycystic kidney disease protein 1-like 3 [Exaiptasia diaphana]
KXJ14415.1 EDIAP_KXJ14415.1 5 3 17.5 291 0.000882613 U5 small nuclear ribonucleoprotein 200 kDa helicase [Exaiptasia diaphana]
KXJ15983.1 EDIAP_KXJ15983.1 5 3 6.2 582 0.000882613 Ornithine decarboxylase [Exaiptasia diaphana]
KXJ20450.1 EDIAP_KXJ20450.1 5 3 11.5 480 0.000882613 WD repeat-containing protein 90 [Exaiptasia diaphana]
KXJ20902.1 EDIAP_KXJ20902.1 5 3 32.1 134 0.000882613 Choline dehydrogenase, mitochondrial [Exaiptasia diaphana]
KXJ22926.1 EDIAP_KXJ22926.1 5 3 10.8 362 0.000882613 putative ATP-dependent RNA helicase DHX34 [Exaiptasia diaphana]
KXJ25979.1 EDIAP_KXJ25979.1 5 3 9.2 490 0.000882613 putative E3 ubiquitin-protein ligase HERC1 [Exaiptasia diaphana]
KXJ27627.1 EDIAP_KXJ27627.1 5 3 9 333 0.000882613 Fibropellin-1 [Exaiptasia diaphana]
KXJ28802.1 EDIAP_KXJ28802.1 5 3 12.5 337 0.000882613 putative histone-lysine N-methyltransferase PRDM6 [Exaiptasia diaphana]
KXJ29741.1 EDIAP_KXJ29741.1 5 3 14.4 353 0.000882613 Accumulation-associated protein [Exaiptasia diaphana]
KXJ04907.1 EDIAP_KXJ04907.1 4 3 38 100 0.000882613 hypothetical protein AC249_AIPGENE5092, partial [Exaiptasia diaphana]
KXJ07057.1 EDIAP_KXJ07057.1 4 3 61 59 0.000882613 Venom prothrombin activator oscutarin-C non-catalytic subunit [Exaiptasia diaphana]
KXJ07672.1 EDIAP_KXJ07672.1 4 3 34 103 0.000882613 Cysteine and glycine-rich protein 2 [Exaiptasia diaphana]
KXJ08172.1 EDIAP_KXJ08172.1 4 3 3.5 1076 0.000882613 Neutral and basic amino acid transport protein rBAT [Exaiptasia diaphana]
KXJ08383.1 EDIAP_KXJ08383.1 4 3 10 340 0.000882613 Uncharacterized protein K02A2.6 [Exaiptasia diaphana]
KXJ13150.1 EDIAP_KXJ13150.1 4 3 9.7 359 0.000882613 Tctex1 domain-containing protein 1 [Exaiptasia diaphana]
KXJ14270.1 EDIAP_KXJ14270.1 4 3 23.7 207 0.000882613 Coagulation factor V [Exaiptasia diaphana]
KXJ14683.1 EDIAP_KXJ14683.1 4 3 7.1 577 0.000882613 Synaptotagmin-4 [Exaiptasia diaphana]
KXJ17928.1 EDIAP_KXJ17928.1 4 3 4.1 880 0.000882613 hypothetical protein AC249_AIPGENE25759 [Exaiptasia diaphana]
Total protein records: 559  (+5 contaminants hidden)
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