Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD009253

SpeciesExaiptasia pallida
TissueIndividuals (symbiosis)
PRIDE accessionPXD009253
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins559
Peptides (q≤0.01)1673
PSMs (q≤0.01)2523
reprocessed against the CnidoSite reference proteome
5 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ23478.1 EDIAP_KXJ23478.1 4 3 16.5 266 0.000882613 Transcription factor SOX-30 [Exaiptasia diaphana]
KXJ25397.1 EDIAP_KXJ25397.1 4 3 4.3 536 0.000882613 Methionine aminopeptidase 2 [Exaiptasia diaphana]
KXJ25828.1 EDIAP_KXJ25828.1 4 3 5.9 848 0.000882613 hypothetical protein AC249_AIPGENE27655 [Exaiptasia diaphana]
KXJ27586.1 EDIAP_KXJ27586.1 4 3 11.9 427 0.000882613 hypothetical protein AC249_AIPGENE7575 [Exaiptasia diaphana]
KXJ28017.1 EDIAP_KXJ28017.1 4 3 10.2 334 0.000882613 Heat shock cognate 71 kDa protein [Exaiptasia diaphana]
KXJ28182.1 EDIAP_KXJ28182.1 4 3 10.7 689 0.000882613 Disks large-associated protein 1 [Exaiptasia diaphana]
KXJ28853.1 EDIAP_KXJ28853.1 4 3 10 511 0.000882613 Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [Exaiptasia diaphana]
KXJ11831.1 EDIAP_KXJ11831.1 3 3 7.9 671 0.000882613 Methionine-R-sulfoxide reductase B3 [Exaiptasia diaphana]
KXJ17203.1 EDIAP_KXJ17203.1 3 3 13.2 174 0.000882613 Cyclin-dependent kinase 11B [Exaiptasia diaphana]
KXJ18589.1 EDIAP_KXJ18589.1 3 3 5.8 875 0.00150263 hypothetical protein AC249_AIPGENE8975 [Exaiptasia diaphana]
KXJ19595.1 EDIAP_KXJ19595.1 3 3 5.6 483 0.000882613 Homologous-pairing protein 2-like [Exaiptasia diaphana]
KXJ20364.1 EDIAP_KXJ20364.1 3 3 23.4 256 0.00150263 UPF0686 protein C11orf1-like [Exaiptasia diaphana]
KXJ20389.1 EDIAP_KXJ20389.1 3 3 4.8 857 0.000882613 Sodium-coupled monocarboxylate transporter 1 [Exaiptasia diaphana]
KXJ22151.1 EDIAP_KXJ22151.1 3 3 13.8 247 0.000882613 hypothetical protein AC249_AIPGENE4193 [Exaiptasia diaphana]
KXJ25054.1 EDIAP_KXJ25054.1 3 3 6.5 397 0.000882613 hypothetical protein AC249_AIPGENE29247 [Exaiptasia diaphana]
KXJ26382.1 EDIAP_KXJ26382.1 3 3 11.1 524 0.000882613 hypothetical protein AC249_AIPGENE11632 [Exaiptasia diaphana]
KXJ26942.1 EDIAP_KXJ26942.1 3 3 9.1 275 0.000882613 hypothetical protein AC249_AIPGENE16458 [Exaiptasia diaphana]
KXJ27230.1 EDIAP_KXJ27230.1 3 3 13.7 285 0.000882613 Voltage-gated hydrogen channel 1 [Exaiptasia diaphana]
KXJ28809.1 EDIAP_KXJ28809.1 3 3 16.1 242 0.000882613 Centrosomal protein of 120 kDa [Exaiptasia diaphana]
KXJ29519.1 EDIAP_KXJ29519.1 3 3 17.2 169 0.000882613 Acetylcholinesterase [Exaiptasia diaphana]
KXJ30180.1 EDIAP_KXJ30180.1 3 3 14.2 289 0.000882613 Synaptoporin [Exaiptasia diaphana]
KXJ14213.1 EDIAP_KXJ14213.1 6 2 16 106 0.000882613 von Willebrand factor A domain-containing protein 3A [Exaiptasia diaphana]
KXJ26533.1 EDIAP_KXJ26533.1 6 2 6.4 452 0.000882613 Dolichyl-phosphate beta-glucosyltransferase [Exaiptasia diaphana]
KXJ17680.1 EDIAP_KXJ17680.1 5 2 23.1 117 0.000882613 N-terminal EF-hand calcium-binding protein 1 [Exaiptasia diaphana]
KXJ21839.1 EDIAP_KXJ21839.1 5 2 11.6 268 0.000882613 Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [Exaiptasia diaphana]
Total protein records: 559  (+5 contaminants hidden)
Show: proteins per page
« First ‹ Previous 1 4 5 6 7 8 9 10 23 Next › Last » of 23 pages
TOP