Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD009253

SpeciesExaiptasia pallida
TissueIndividuals (symbiosis)
PRIDE accessionPXD009253
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins559
Peptides (q≤0.01)1673
PSMs (q≤0.01)2523
reprocessed against the CnidoSite reference proteome
5 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ24686.1 EDIAP_KXJ24686.1 5 2 12.1 315 0.000882613 hypothetical protein AC249_AIPGENE20991 [Exaiptasia diaphana]
KXJ26964.1 EDIAP_KXJ26964.1 5 2 26.6 124 0.000882613 ATP-dependent DNA helicase Q1 [Exaiptasia diaphana]
KXJ27736.1 EDIAP_KXJ27736.1 5 2 1.9 1657 0.000882613 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 [Exaiptasia diaphana]
KXJ27886.1 EDIAP_KXJ27886.1 5 2 15.5 129 0.000882613 Transposon Tf2-6 polyprotein [Exaiptasia diaphana]
KXJ07675.1 EDIAP_KXJ07675.1 4 2 36.7 79 0.000882613 C-C chemokine receptor type 2 [Exaiptasia diaphana]
KXJ11071.1 EDIAP_KXJ11071.1 4 2 20.2 267 0.00150263 Heterogeneous nuclear ribonucleoprotein U-like protein 1 [Exaiptasia diaphana]
KXJ12379.1 EDIAP_KXJ12379.1 4 2 7 244 0.000882613 Transcription factor MafK [Exaiptasia diaphana]
KXJ14211.1 EDIAP_KXJ14211.1 4 2 10.9 229 0.000882613 hypothetical protein AC249_AIPGENE21897 [Exaiptasia diaphana]
KXJ17140.1 EDIAP_KXJ17140.1 4 2 5.1 650 0.000882613 hypothetical protein AC249_AIPGENE8130 [Exaiptasia diaphana]
KXJ21792.1 EDIAP_KXJ21792.1 4 2 4.8 315 0.000882613 hypothetical protein AC249_AIPGENE2384 [Exaiptasia diaphana]
KXJ22859.1 EDIAP_KXJ22859.1 4 2 22.1 95 0.000882613 CCR4-NOT transcription complex subunit 7 [Exaiptasia diaphana]
KXJ23495.1 EDIAP_KXJ23495.1 4 2 9.6 311 0.00150263 hypothetical protein AC249_AIPGENE7246 [Exaiptasia diaphana]
KXJ25045.1 EDIAP_KXJ25045.1 4 2 7.8 358 0.000882613 hypothetical protein AC249_AIPGENE29223 [Exaiptasia diaphana]
KXJ27416.1 EDIAP_KXJ27416.1 4 2 12.6 270 0.000882613 Mediator of RNA polymerase II transcription subunit 10 [Exaiptasia diaphana]
KXJ05470.1 EDIAP_KXJ05470.1 3 2 42.3 97 0.000882613 hypothetical protein AC249_AIPGENE7902, partial [Exaiptasia diaphana]
KXJ05532.1 EDIAP_KXJ05532.1 3 2 32.9 79 0.000882613 Lactadherin, partial [Exaiptasia diaphana]
KXJ09404.1 EDIAP_KXJ09404.1 3 2 6.5 431 0.000882613 Uncharacterized protein KIAA1109 [Exaiptasia diaphana]
KXJ09442.1 EDIAP_KXJ09442.1 3 2 10 380 0.000882613 Talin-1 [Exaiptasia diaphana]
KXJ10827.1 EDIAP_KXJ10827.1 3 2 10.1 278 0.000882613 Centrosomal protein of 290 kDa [Exaiptasia diaphana]
KXJ10840.1 EDIAP_KXJ10840.1 3 2 11.5 348 0.000882613 Exosome complex exonuclease RRP42 [Exaiptasia diaphana]
KXJ11857.1 EDIAP_KXJ11857.1 3 2 4.6 628 0.000882613 Sorting nexin-16 [Exaiptasia diaphana]
KXJ12873.1 EDIAP_KXJ12873.1 3 2 17.3 110 0.000882613 Failed axon connections-like [Exaiptasia diaphana]
KXJ13494.1 EDIAP_KXJ13494.1 3 2 8.1 272 0.000882613 Dynein heavy chain 6, axonemal [Exaiptasia diaphana]
KXJ14773.1 EDIAP_KXJ14773.1 3 2 5.2 496 0.000882613 Transcriptional adapter 2-alpha [Exaiptasia diaphana]
KXJ16120.1 EDIAP_KXJ16120.1 3 2 7.5 414 0.000882613 Rho-related GTP-binding protein RhoE [Exaiptasia diaphana]
Total protein records: 559  (+5 contaminants hidden)
Show: proteins per page
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