Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD010839

SpeciesZoanthus natalensis
Tissuecolony
PRIDE accessionPXD010839
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sdb/jackie/cnidaria_omics/transcriptome_proteins/Zoanthus_sociatus.rep.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949,n+42.010565,NQ+0.984016
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins3675
Peptides (q≤0.01)13401
PSMs (q≤0.01)50724
reprocessed against the CnidoSite reference proteome
10 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
TRINITY_DN246_c1_g1 TRINITY_DN246_c1_g1_i2.p1 68 9 20.4 651 0.000100503
TRINITY_DN2477_c0_g4 TRINITY_DN2477_c0_g4_i1.p1 66 9 12.8 627 0.000100503
TRINITY_DN157301_c0_g1 TRINITY_DN157301_c0_g1_i1.p1 54 9 24.3 415 0.000100503
TRINITY_DN745_c1_g1 TRINITY_DN745_c1_g1_i16.p1 54 9 29.7 354 0.000100503
TRINITY_DN1438_c2_g1 TRINITY_DN1438_c2_g1_i4.p1 53 9 25.6 403 0.000100503
TRINITY_DN22670_c0_g1 TRINITY_DN22670_c0_g1_i1.p1 53 9 25.2 552 0.000100503
TRINITY_DN4279_c1_g1 TRINITY_DN4279_c1_g1_i1.p1 53 9 39.2 212 0.000100503
TRINITY_DN165901_c0_g1 TRINITY_DN165901_c0_g1_i1.p1 48 9 11.8 765 0.000100503
TRINITY_DN24630_c0_g1 TRINITY_DN24630_c0_g1_i1.p1 48 9 21.4 426 0.000100503
TRINITY_DN29442_c0_g1 TRINITY_DN29442_c0_g1_i1.p1 48 9 17.3 577 0.000100503
TRINITY_DN22_c6_g1 TRINITY_DN22_c6_g1_i1.p1 46 9 29.5 430 0.000100503
TRINITY_DN42220_c0_g1 TRINITY_DN42220_c0_g1_i12.p1 46 9 33.9 384 0.000100503
TRINITY_DN2903_c0_g3 TRINITY_DN2903_c0_g3_i2.p1 45 9 14.5 778 0.000100503
TRINITY_DN112_c1_g1 TRINITY_DN112_c1_g1_i1.p1 42 9 24.4 472 0.000100503
TRINITY_DN32690_c0_g1 TRINITY_DN32690_c0_g1_i1.p1 42 9 18.3 529 0.000100503
TRINITY_DN26207_c0_g1 TRINITY_DN26207_c0_g1_i3.p1 41 9 27.8 450 0.000100503
TRINITY_DN173500_c0_g1 TRINITY_DN173500_c0_g1_i1.p1 40 9 46.5 286 0.000100503
TRINITY_DN7680_c0_g1 TRINITY_DN7680_c0_g1_i5.p1 40 9 34.7 369 0.000100503
TRINITY_DN8826_c0_g2 TRINITY_DN8826_c0_g2_i1.p1 40 9 15.2 759 0.000100503
TRINITY_DN1076_c0_g2 TRINITY_DN1076_c0_g2_i1.p1 38 9 11.9 1224 0.000100503
TRINITY_DN38_c0_g1 TRINITY_DN38_c0_g1_i1.p1 38 9 51.1 229 0.000100503
TRINITY_DN3096_c1_g1 TRINITY_DN3096_c1_g1_i12.p1 37 9 17.5 473 0.000100503
TRINITY_DN5052_c0_g1 TRINITY_DN5052_c0_g1_i1.p1 36 9 27.7 394 0.000100503
TRINITY_DN28660_c0_g1 TRINITY_DN28660_c0_g1_i1.p1 35 9 19 711 0.000100503
TRINITY_DN125_c0_g1 TRINITY_DN125_c0_g1_i1.p1 34 9 29 389 0.000100503
Total protein records: 3675  (+10 contaminants hidden)
Show: proteins per page
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