Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD010839

SpeciesZoanthus natalensis
Tissuecolony
PRIDE accessionPXD010839
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sdb/jackie/cnidaria_omics/transcriptome_proteins/Zoanthus_sociatus.rep.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949,n+42.010565,NQ+0.984016
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins3675
Peptides (q≤0.01)13401
PSMs (q≤0.01)50724
reprocessed against the CnidoSite reference proteome
10 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
TRINITY_DN18229_c1_g1 TRINITY_DN18229_c1_g1_i1.p1 42 13 22.2 805 0.000100503
TRINITY_DN5805_c0_g2 TRINITY_DN5805_c0_g2_i1.p1 38 13 17 1008 0.000100503
TRINITY_DN985_c0_g3 TRINITY_DN985_c0_g3_i1.p1 38 13 6.2 2973 0.000100503
TRINITY_DN3183_c0_g1 TRINITY_DN3183_c0_g1_i1.p1 37 13 18.4 1001 0.000100503
TRINITY_DN2508_c0_g2 TRINITY_DN2508_c0_g2_i1.p1 34 13 22.3 821 0.000100503
TRINITY_DN14154_c0_g2 TRINITY_DN14154_c0_g2_i1.p1 29 13 14.3 1387 0.000100503
TRINITY_DN35536_c1_g1 TRINITY_DN35536_c1_g1_i1.p1 28 13 25.1 696 0.000100503
TRINITY_DN15812_c0_g2 TRINITY_DN15812_c0_g2_i2.p1 25 13 16.5 1141 0.000100503
TRINITY_DN30670_c0_g1 TRINITY_DN30670_c0_g1_i2.p1 23 13 17.8 1082 0.000100503
TRINITY_DN789_c0_g2 TRINITY_DN789_c0_g2_i2.p1 89 12 24.6 524 0.000100503
TRINITY_DN161607_c0_g1 TRINITY_DN161607_c0_g1_i1.p1 79 12 22.6 446 0.000100503
TRINITY_DN1181_c2_g1 TRINITY_DN1181_c2_g1_i14.p1 73 12 24.6 536 0.000100503
TRINITY_DN670_c1_g1 TRINITY_DN670_c1_g1_i1.p1 72 12 31.2 430 0.000100503
TRINITY_DN915_c0_g3 TRINITY_DN915_c0_g3_i1.p1 66 12 14.5 434 0.000100503
TRINITY_DN28231_c0_g1 TRINITY_DN28231_c0_g1_i5.p1 55 12 13.9 916 0.000100503
TRINITY_DN155600_c0_g1 TRINITY_DN155600_c0_g1_i1.p2 52 12 15.4 1061 0.000100503
TRINITY_DN11311_c0_g2 TRINITY_DN11311_c0_g2_i2.p1 51 12 40.3 429 0.000100503
TRINITY_DN166203_c0_g1 TRINITY_DN166203_c0_g1_i1.p1 48 12 15.5 748 0.000100503
TRINITY_DN632_c0_g3 TRINITY_DN632_c0_g3_i2.p1 48 12 27.8 515 0.000100503
TRINITY_DN31040_c0_g1 TRINITY_DN31040_c0_g1_i1.p2 45 12 34.9 519 0.000100503
TRINITY_DN2517_c0_g2 TRINITY_DN2517_c0_g2_i1.p1 43 12 25.8 869 0.000100503
TRINITY_DN335_c0_g2 TRINITY_DN335_c0_g2_i1.p1 41 12 27.2 537 0.000100503
TRINITY_DN38840_c0_g1 TRINITY_DN38840_c0_g1_i1.p1 41 12 43.3 372 0.000100503
TRINITY_DN49952_c0_g1 TRINITY_DN49952_c0_g1_i1.p1 40 12 32.4 513 0.000100503
TRINITY_DN183_c0_g1 TRINITY_DN183_c0_g1_i1.p2 37 12 10.3 1676 0.000100503
Total protein records: 3675  (+10 contaminants hidden)
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