Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD010839

SpeciesZoanthus natalensis
Tissuecolony
PRIDE accessionPXD010839
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sdb/jackie/cnidaria_omics/transcriptome_proteins/Zoanthus_sociatus.rep.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949,n+42.010565,NQ+0.984016
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins3675
Peptides (q≤0.01)13401
PSMs (q≤0.01)50724
reprocessed against the CnidoSite reference proteome
10 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
TRINITY_DN515_c0_g1 TRINITY_DN515_c0_g1_i4.p1 36 12 18.7 922 0.000100503
TRINITY_DN11109_c0_g2 TRINITY_DN11109_c0_g2_i2.p1 34 12 19.6 789 0.000100503
TRINITY_DN65701_c0_g1 TRINITY_DN65701_c0_g1_i1.p1 34 12 24.6 707 0.000100503
TRINITY_DN8655_c0_g7 TRINITY_DN8655_c0_g7_i1.p1 34 12 21.1 914 0.000100503
TRINITY_DN257_c0_g1 TRINITY_DN257_c0_g1_i4.p1 33 12 24.3 770 0.000100503
TRINITY_DN45501_c0_g1 TRINITY_DN45501_c0_g1_i1.p1 32 12 29.1 498 0.000100503
TRINITY_DN66492_c0_g1 TRINITY_DN66492_c0_g1_i1.p1 32 12 15.1 1103 0.000100503
TRINITY_DN47281_c0_g1 TRINITY_DN47281_c0_g1_i1.p1 31 12 13 971 0.000100503
TRINITY_DN5901_c1_g2 TRINITY_DN5901_c1_g2_i1.p1 30 12 17.1 1074 0.000100503
TRINITY_DN3863_c1_g1 TRINITY_DN3863_c1_g1_i1.p1 29 12 18.7 772 0.000100503
TRINITY_DN722_c0_g4 TRINITY_DN722_c0_g4_i2.p1 23 12 24.2 670 0.000100503
TRINITY_DN106410_c0_g1 TRINITY_DN106410_c0_g1_i1.p1 22 12 7.5 2254 0.000100503
TRINITY_DN155830_c0_g1 TRINITY_DN155830_c0_g1_i1.p1 20 12 8.9 1967 0.000100503
TRINITY_DN92260_c0_g1 TRINITY_DN92260_c0_g1_i1.p1 16 12 4.9 3651 0.000100503
TRINITY_DN2850_c1_g1 TRINITY_DN2850_c1_g1_i1.p1 118 11 29.6 450 0.000100503
TRINITY_DN108500_c0_g1 TRINITY_DN108500_c0_g1_i1.p1 92 11 18.4 675 0.000100503
TRINITY_DN2266_c1_g1 TRINITY_DN2266_c1_g1_i2.p1 75 11 31.3 508 0.000100503
TRINITY_DN19152_c1_g1 TRINITY_DN19152_c1_g1_i11.p1 72 11 57.1 205 0.000100503
TRINITY_DN6400_c0_g3 TRINITY_DN6400_c0_g3_i1.p1 71 11 37.1 272 0.000100503
TRINITY_DN112_c0_g1 TRINITY_DN112_c0_g1_i15.p1 67 11 43.1 181 0.000100503
TRINITY_DN4768_c2_g1 TRINITY_DN4768_c2_g1_i3.p1 64 11 37.9 343 0.000100503
TRINITY_DN27802_c0_g1 TRINITY_DN27802_c0_g1_i2.p1 62 11 28.4 204 0.000100503
TRINITY_DN165507_c0_g1 TRINITY_DN165507_c0_g1_i1.p1 56 11 33.1 405 0.000100503
TRINITY_DN118_c0_g1 TRINITY_DN118_c0_g1_i1.p1 50 11 32.5 498 0.000100503
TRINITY_DN14_c1_g1 TRINITY_DN14_c1_g1_i1.p1 50 11 58.9 168 0.000100503
Total protein records: 3675  (+10 contaminants hidden)
Show: proteins per page
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