Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD018851

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts (cysts)
PRIDE accessionPXD018851
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1386
Peptides (q≤0.01)4672
PSMs (q≤0.01)6643
reprocessed against the CnidoSite reference proteome
30 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KII72933.1 TKITA_KII72933.1 5 5 18.5 357 0.000289436 hypothetical protein RF11_12301 [Thelohanellus kitauei]
EVM0001988.1 MHONG_EVM0001988.1 11 4 39.2 153 0.000289436 gene=EVM0001988
KII61498.1 TKITA_KII61498.1 11 4 16.5 376 0.000289436 hypothetical protein RF11_12914 [Thelohanellus kitauei]
EVM0010910.1 MHONG_EVM0010910.1 10 4 14.3 279 0.000289436 gene=EVM0010910
EVM0014328.1 MHONG_EVM0014328.1 8 4 28.8 146 0.000289436 gene=EVM0014328
KII65350.1 TKITA_KII65350.1 8 4 41.9 155 0.000289436 hypothetical protein RF11_02770 [Thelohanellus kitauei]
EVM0001395.1 MHONG_EVM0001395.1 7 4 29.2 130 0.000289436 gene=EVM0001395
EVM0006084.1 MHONG_EVM0006084.1 7 4 15.3 242 0.000289436 gene=EVM0006084
KII61548.1 TKITA_KII61548.1 7 4 34.6 191 0.000289436 Retrovirus-related Pol polyprotein from transposon 17.6 [Thelohanellus kitauei]
KII69402.1 TKITA_KII69402.1 7 4 6.7 599 0.000289436 hypothetical protein RF11_11046 [Thelohanellus kitauei]
EVM0000193.1 MHONG_EVM0000193.1 6 4 25.7 144 0.000289436 gene=EVM0000193
EVM0003078.1 MHONG_EVM0003078.1 6 4 29.9 211 0.000289436 gene=EVM0003078
EVM0003829.1 MHONG_EVM0003829.1 6 4 14.6 315 0.000289436 gene=EVM0003829
EVM0005679.1 MHONG_EVM0005679.1 6 4 22.9 175 0.000289436 gene=EVM0005679
EVM0010341.1 MHONG_EVM0010341.1 6 4 27.3 183 0.000289436 gene=EVM0010341
EVM0011046.1 MHONG_EVM0011046.1 6 4 9.9 203 0.000289436 gene=EVM0011046
EVM0013719.1 MHONG_EVM0013719.1 6 4 9.8 448 0.000289436 gene=EVM0013719
EVM0013860.1 MHONG_EVM0013860.1 6 4 24.6 211 0.000289436 gene=EVM0013860
KII73746.1 TKITA_KII73746.1 6 4 7.3 477 0.000289436 Integrator complex subunit 7 [Thelohanellus kitauei]
EVM0002546.1 MHONG_EVM0002546.1 5 4 13.2 273 0.000289436 gene=EVM0002546
EVM0003987.1 MHONG_EVM0003987.1 5 4 4.7 893 0.000289436 gene=EVM0003987
EVM0004185.1 MHONG_EVM0004185.1 5 4 26.9 171 0.000289436 gene=EVM0004185
EVM0004592.1 MHONG_EVM0004592.1 5 4 8.5 423 0.000289436 gene=EVM0004592
EVM0004808.1 MHONG_EVM0004808.1 5 4 40.6 138 0.000289436 gene=EVM0004808
EVM0005379.1 MHONG_EVM0005379.1 5 4 4.6 1117 0.000289436 gene=EVM0005379
Total protein records: 1386  (+30 contaminants hidden)
Show: proteins per page
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