Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD018851

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts (cysts)
PRIDE accessionPXD018851
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1386
Peptides (q≤0.01)4672
PSMs (q≤0.01)6643
reprocessed against the CnidoSite reference proteome
30 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KII60550.1 TKITA_KII60550.1 6 3 24.7 154 0.000289436 hypothetical protein RF11_06550 [Thelohanellus kitauei]
KII66831.1 TKITA_KII66831.1 6 3 15.5 155 0.000289436 hypothetical protein RF11_02430 [Thelohanellus kitauei]
KII71748.1 TKITA_KII71748.1 6 3 29.4 109 0.000289436 hypothetical protein RF11_07967 [Thelohanellus kitauei]
KII72965.1 TKITA_KII72965.1 6 3 13.5 282 0.000289436 hypothetical protein RF11_09989 [Thelohanellus kitauei]
EVM0000023.1 MHONG_EVM0000023.1 5 3 11.2 421 0.000289436 gene=EVM0000023
EVM0000749.1 MHONG_EVM0000749.1 5 3 28.2 117 0.000289436 gene=EVM0000749
EVM0002373.1 MHONG_EVM0002373.1 5 3 3.1 976 0.000289436 gene=EVM0002373
EVM0004956.1 MHONG_EVM0004956.1 5 3 9.7 217 0.000289436 gene=EVM0004956
EVM0005757.1 MHONG_EVM0005757.1 5 3 11.9 160 0.000289436 gene=EVM0005757
EVM0006165.1 MHONG_EVM0006165.1 5 3 18.8 266 0.000289436 gene=EVM0006165
EVM0012263.1 MHONG_EVM0012263.1 5 3 3.8 1136 0.000289436 gene=EVM0012263
EVM0000028.1 MHONG_EVM0000028.1 4 3 14.2 219 0.000289436 gene=EVM0000028
EVM0000188.1 MHONG_EVM0000188.1 4 3 5.8 583 0.000289436 gene=EVM0000188
EVM0000366.1 MHONG_EVM0000366.1 4 3 19.2 208 0.000289436 gene=EVM0000366
EVM0000435.1 MHONG_EVM0000435.1 4 3 4.9 613 0.000289436 gene=EVM0000435
EVM0003686.1 MHONG_EVM0003686.1 4 3 21.1 180 0.000289436 gene=EVM0003686
EVM0006202.1 MHONG_EVM0006202.1 4 3 22.8 136 0.000289436 gene=EVM0006202
EVM0006499.1 MHONG_EVM0006499.1 4 3 10 251 0.00109769 gene=EVM0006499
EVM0008817.1 MHONG_EVM0008817.1 4 3 21.3 169 0.000289436 gene=EVM0008817
EVM0009053.1 MHONG_EVM0009053.1 4 3 2.7 591 0.000289436 gene=EVM0009053
EVM0009297.1 MHONG_EVM0009297.1 4 3 14 436 0.000289436 gene=EVM0009297
EVM0009412.1 MHONG_EVM0009412.1 4 3 11.5 357 0.000289436 gene=EVM0009412
EVM0009724.3 MHONG_EVM0009724.3 4 3 15 200 0.000289436 gene=EVM0009724
EVM0010161.1 MHONG_EVM0010161.1 4 3 8.4 462 0.000289436 gene=EVM0010161
EVM0010440.1 MHONG_EVM0010440.1 4 3 14.8 176 0.000289436 gene=EVM0010440
Total protein records: 1386  (+30 contaminants hidden)
Show: proteins per page
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