Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD018851

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts (cysts)
PRIDE accessionPXD018851
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1386
Peptides (q≤0.01)4672
PSMs (q≤0.01)6643
reprocessed against the CnidoSite reference proteome
30 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KII61441.1 TKITA_KII61441.1 14 12 24.1 536 0.000289436 hypothetical protein RF11_12856 [Thelohanellus kitauei]
EVM0001048.1 MHONG_EVM0001048.1 35 11 38.7 315 0.000289436 gene=EVM0001048
EVM0004778.1 MHONG_EVM0004778.1 20 11 7.7 1551 0.000289436 gene=EVM0004778
EVM0015042.1 MHONG_EVM0015042.1 17 11 33 400 0.000289436 gene=EVM0015042
KII65079.1 TKITA_KII65079.1 17 11 25.6 528 0.000289436 PC3-like endoprotease variant A [Thelohanellus kitauei]
EVM0006288.1 MHONG_EVM0006288.1 13 11 12.8 987 0.000289436 gene=EVM0006288
EVM0014398.1 MHONG_EVM0014398.1 13 11 32.5 428 0.000289436 gene=EVM0014398
EVM0014942.1 MHONG_EVM0014942.1 13 11 29.9 408 0.000289436 gene=EVM0014942
KII61323.1 TKITA_KII61323.1 12 11 16.6 694 0.000289436 hypothetical protein RF11_15580 [Thelohanellus kitauei]
EVM0003235.1 MHONG_EVM0003235.1 11 11 27.9 458 0.000289436 gene=EVM0003235
EVM0011168.1 MHONG_EVM0011168.1 11 11 22.2 504 0.000289436 gene=EVM0011168
EVM0014225.1 MHONG_EVM0014225.1 47 10 27.3 462 0.000289436 gene=EVM0014225
KII73482.1 TKITA_KII73482.1 28 10 30.4 474 0.000289436 hypothetical protein RF11_11811 [Thelohanellus kitauei]
EVM0000059.1 MHONG_EVM0000059.1 25 10 26.5 408 0.000289436 gene=EVM0000059
EVM0001481.1 MHONG_EVM0001481.1 25 10 38 208 0.000289436 gene=EVM0001481
KII70413.1 TKITA_KII70413.1 21 10 20.3 497 0.000289436 Collagen alpha-3(VI) chain [Thelohanellus kitauei]
KII63674.1 TKITA_KII63674.1 18 10 16.8 674 0.000289436 H/ACA ribonucleoprotein complex subunit 2-like protein [Thelohanellus kitauei]
EVM0006741.1 MHONG_EVM0006741.1 17 10 23.1 381 0.000289436 gene=EVM0006741
EVM0000556.1 MHONG_EVM0000556.1 14 10 20 536 0.000289436 gene=EVM0000556
EVM0010297.1 MHONG_EVM0010297.1 13 10 18 593 0.000289436 gene=EVM0010297
EVM0000886.1 MHONG_EVM0000886.1 12 10 26.7 510 0.000289436 gene=EVM0000886
EVM0006375.1 MHONG_EVM0006375.1 12 10 32.1 277 0.000289436 gene=EVM0006375
EVM0002710.1 MHONG_EVM0002710.1 11 10 6 1867 0.000289436 gene=EVM0002710
EVM0010496.1 MHONG_EVM0010496.1 11 10 28.8 382 0.000289436 gene=EVM0010496
EVM0010534.1 MHONG_EVM0010534.1 11 10 14.5 691 0.000289436 gene=EVM0010534
Total protein records: 1386  (+30 contaminants hidden)
Show: proteins per page
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