Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD018851

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts (cysts)
PRIDE accessionPXD018851
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1386
Peptides (q≤0.01)4672
PSMs (q≤0.01)6643
reprocessed against the CnidoSite reference proteome
30 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
EVM0014716.1 MHONG_EVM0014716.1 11 10 6.7 1276 0.000289436 gene=EVM0014716
KII60969.1 TKITA_KII60969.1 11 10 20.2 689 0.000289436 Mitochondrial inner membrane protease subunit 1 [Thelohanellus kitauei]
KII70778.1 TKITA_KII70778.1 11 10 22.7 529 0.000289436 Endoplasmic reticulum aminopeptidase 1 [Thelohanellus kitauei]
EVM0005807.1 MHONG_EVM0005807.1 10 10 6.5 1595 0.000289436 gene=EVM0005807
EVM0007165.1 MHONG_EVM0007165.1 10 10 13.2 878 0.000289436 gene=EVM0007165
EVM0011456.1 MHONG_EVM0011456.1 10 10 19.3 445 0.000289436 gene=EVM0011456
KII70724.1 TKITA_KII70724.1 20 9 22.9 327 0.000289436 hypothetical protein RF11_09060 [Thelohanellus kitauei]
EVM0005850.1 MHONG_EVM0005850.1 17 9 56.3 183 0.000289436 gene=EVM0005850
KII70048.1 TKITA_KII70048.1 16 9 19 469 0.000289436 hypothetical protein RF11_08527 [Thelohanellus kitauei]
EVM0009793.1 MHONG_EVM0009793.1 14 9 15.6 662 0.000289436 gene=EVM0009793
EVM0011055.1 MHONG_EVM0011055.1 14 9 17.2 574 0.000289436 gene=EVM0011055
KII62880.1 TKITA_KII62880.1 14 9 20.7 464 0.000289436 hypothetical protein RF11_12241 [Thelohanellus kitauei]
KII68449.1 TKITA_KII68449.1 14 9 36.8 342 0.000289436 hypothetical protein RF11_10807 [Thelohanellus kitauei]
EVM0000367.1 MHONG_EVM0000367.1 13 9 33.7 291 0.000289436 gene=EVM0000367
EVM0014265.1 MHONG_EVM0014265.1 13 9 33.5 251 0.000289436 gene=EVM0014265
EVM0014780.1 MHONG_EVM0014780.1 12 9 17.3 617 0.000289436 gene=EVM0014780
EVM0001196.1 MHONG_EVM0001196.1 11 9 21.9 433 0.000289436 gene=EVM0001196
EVM0003010.1 MHONG_EVM0003010.1 11 9 26.4 314 0.000289436 gene=EVM0003010
EVM0005229.1 MHONG_EVM0005229.1 11 9 75.2 149 0.000289436 gene=EVM0005229
EVM0014659.1 MHONG_EVM0014659.1 11 9 25.7 432 0.000289436 gene=EVM0014659
EVM0002470.1 MHONG_EVM0002470.1 10 9 6.9 1200 0.000289436 gene=EVM0002470
EVM0006083.1 MHONG_EVM0006083.1 10 9 14.3 663 0.000289436 gene=EVM0006083
EVM0007915.1 MHONG_EVM0007915.1 10 9 12.9 790 0.000289436 gene=EVM0007915
EVM0010105.1 MHONG_EVM0010105.1 10 9 39.5 253 0.000289436 gene=EVM0010105
EVM0014128.1 MHONG_EVM0014128.1 10 9 26.5 434 0.000289436 gene=EVM0014128
Total protein records: 1386  (+30 contaminants hidden)
Show: proteins per page
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